Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 422 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 60/281 (21%), Positives = 116/281 (41%), Gaps = 8/281 (2%)

Query: 27  IKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRNC 86
           I  F   R+   +  S++ N    L  F+ +CE+ G           ++ F    N+ NC
Sbjct: 117 ILDFLRRRQQRGMSRSSLHNYQRHLYEFMEYCEKRGIGSVGYIDLPLLLHFI---NQYNC 173

Query: 87  TVRT-QNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145
             +T      + L++F R L   N    +  S   +     + K     + +   ++I  
Sbjct: 174 DKKTVMIVLISTLRIFLRYLFKENLTAIDYSSKVPRCKKVTQPKIPSLYSKEEVEKLIAS 233

Query: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205
           +  S S T  R+  I+ +    G R S+   +++K+  +      I   KT     + + 
Sbjct: 234 VDRS-SPTGKRNYAIIMLAARLGLRASDISRLKFKNLHWNTSTIEIDQVKTGNPLQLPLL 292

Query: 206 EETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEG 265
            +    + DY++         ++F       G     + +T+V ++A+ K    G+  + 
Sbjct: 293 PDVGNAIIDYLQYGRPVSEEPHVFLTGRPPYGCFTTSNVVTHVVQRAIIKA---GIDTKN 349

Query: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYY 306
           +R   HSLRH     +L+K   + V+ E+ GH+S E+T +Y
Sbjct: 350 RRFGPHSLRHSLGFRMLEKSTMLPVISEVFGHKSSESTRFY 390