Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 315 a.a., site-specific recombinase from Agrobacterium fabrum C58

 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 17/156 (10%)

Query: 156 RDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDT----KTYEERTVVIAEETVEI 211
           R+A ++ +L+  G R SEAL +     DF  G   +R T    KT     + +  E V+ 
Sbjct: 155 RNAAVLSLLYGCGLRISEALGLT--PADFPPGTRSLRITGKGNKTRIVPLLAVVTEAVDT 212

Query: 212 VRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIH 271
            R      +  D         M    +  KL     + ++ ++KL+    +PE      H
Sbjct: 213 YRKLCPYALAADE-------PMFLGARGGKLQ--PAIIQREMQKLRGAFGLPENA--TPH 261

Query: 272 SLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYS 307
           +LRH  AT LL  G  +  ++E+LGH SL TT  Y+
Sbjct: 262 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 297