Pairwise Alignments

Query, 309 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 635 a.a., Selenocysteine-specific translation elongation factor from Variovorax sp. SCN45

 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 60/320 (18%), Positives = 133/320 (41%), Gaps = 35/320 (10%)

Query: 21  KKGTSTDITL-YNHKNGDDSAVFVEPTRYPERIQPLIYTINMMDYALVFI---DEIKPEI 76
           ++G S ++   Y H     S  FV+   +   +  ++     +D+AL+ +   D + P+ 
Sbjct: 33  RRGISIELGYAYLHAPDGVSLGFVDVPGHERLLHTMLAGATGIDHALLVVAADDGVMPQT 92

Query: 77  GETLLTLDLFGVERGFIVVGEYVDVEQ-------------LKGIISNTSMKNFEFLE--- 120
            E L  + L GV    + + +   +++             +  +++ T +     L    
Sbjct: 93  REHLAVVALLGVREATVAITKIDRIDESMREARLAEVRSDIAALLAPTPLAGAPMLAVSA 152

Query: 121 ---KDYIQIREKMITIPEVEKSSD---FIKIPIDHFFSVKSVGTVILGKVDKGSVSVHDN 174
              +    +RE+++ +    ++ +     ++ +D  F++  VGTV+ G V  G+V + D 
Sbjct: 153 TTGEGVDTLRERLLDVASKARAREDDLAFRLAVDRAFTLSGVGTVVTGTVFSGTVRIGDE 212

Query: 175 LRIYPTNNKAMVKSVQVHDRDVKEAETNSRVGLSLKGISVDDLDRG-MILSNGDLEVSDK 233
           LR+ P +    V+ +   ++  + A    R  L+L G++ D++ RG  + +      +D+
Sbjct: 213 LRVVPGDRSVRVRGIHAQNQKAESAHAGQRCALALAGVTKDEMHRGDWVCAPAIALATDR 272

Query: 234 IELEMKWNPYMNKEVAVGEGYQIIVGLQTVSCKIEEKNGNKLT--------LKLLKPAAF 285
           I++ +   P   K +  G      +G   V   +   + + L         L   +    
Sbjct: 273 IDVLLTLWPDEAKPLRSGTTVHAHLGASDVMASLALLDRDALAPGETALAQLVTKESVGA 332

Query: 286 EKGDKFIMLDGSAKIRIIGV 305
             GD+ ++ D SA   + GV
Sbjct: 333 WHGDRGVLRDASATRTMAGV 352