Pairwise Alignments

Query, 309 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 396 a.a., elongation factor Tu from Magnetospirillum magneticum AMB-1

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 43/196 (21%)

Query: 134 PEVEKSSDFIKIPIDHFFSVKSVGTVILGKVDKGSVSVHDNLRIYPTNN--KAMVKSVQV 191
           PE  K   F+ +PI+  FS+   GTV+ G+V++G V V + + I    N  K     V++
Sbjct: 205 PERPKDKPFL-MPIEDVFSISGRGTVVTGRVERGVVKVGEEVEIVGIKNTVKTTCTGVEM 263

Query: 192 HDRDVKEAETNSRVGLSLKGISVDDLDRGMIL-SNGDLEVSDKIELEMKWNPYMNKE--- 247
             + + + E    +G  L+G   +D++RG +L + G +      E E      +NKE   
Sbjct: 264 FRKLLDQGEAGDNIGALLRGTKREDVERGQVLAAPGSITPHTDFEAEAY---ILNKEEGG 320

Query: 248 -----------------------VAVGEGYQIIVGLQTVSCKIEEKNGNKLTLKLLKPAA 284
                                  VA+ EG ++++    V          K+ + L+ P A
Sbjct: 321 RHTPFFTNYRPQFYFRTTDVTGVVALPEGTEMVMPGDNV----------KMIVTLIAPIA 370

Query: 285 FEKGDKFIMLDGSAKI 300
            ++G +F + +G   +
Sbjct: 371 MDQGLRFAIREGGRTV 386



 Score = 24.6 bits (52), Expect = 0.004
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 88  VERGFIVVGEYVDVEQLKGIISNT 111
           VERG + VGE V++  +K  +  T
Sbjct: 234 VERGVVKVGEEVEIVGIKNTVKTT 257