Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5

 Score = 1031 bits (2666), Expect = 0.0
 Identities = 529/960 (55%), Positives = 698/960 (72%), Gaps = 26/960 (2%)

Query: 2   KDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYA 61
           + + ++GAREHNLKN+ L +PR++L+V TG+SGSGKS++AFDTIYAEGQRRYVESLSAYA
Sbjct: 26  RTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 85

Query: 62  RQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCP 121
           RQFL +M KPDVD I+GLSPAI+I+QKTTSKNPRSTVGTVTEIYDY+RLL+AR G+PY P
Sbjct: 86  RQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTGVPYSP 145

Query: 122 EHNIRIESQSPEKIAEK-IEEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNG 180
              + IESQ+  ++ ++ +       + +L+P+VR +KG Y+K   D   +GF R++VNG
Sbjct: 146 ATGLPIESQTVSQMVDRTLALPEGTRLYLLAPVVRGRKGEYRKELADWMKKGFQRVKVNG 205

Query: 181 EIYRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIVTGTKNNE 239
             +   +   L++  KHDI++V+DR+  + D + RL ++ E AL  + G+ +       +
Sbjct: 206 AFHEIAEAPALDKKFKHDIDVVVDRIVVRADLAQRLADSFETALGLADGIAVAEFADEKD 265

Query: 240 EIEK----IYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPD 295
           E       I+S   ACP+ G +  E++PR+FSFN+PFGAC  C GLG++   D DL++PD
Sbjct: 266 EAGAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGVEQTIDPDLVVPD 325

Query: 296 KNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKI 354
           K + +  GA+A +      Y  Q L A+A H+ F +  P  DL ++  ++L++GS  EKI
Sbjct: 326 KARSLKQGAIAPWAKSTSPYYGQTLDALAKHYHFKLNVPFADLPEQAREVLLFGSGSEKI 385

Query: 355 HFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLK 414
            F   +G    E S  K +EG++    R + ET S++ R+E+ K+     C  C G RLK
Sbjct: 386 TFHYDDGMRAYETS--KTFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLK 443

Query: 415 DKALAVKIEDKSIIDLTDLSISKAEEFFNNL--KLTDKEYEIAKQVIKEIKSRLKFLNDV 472
            +ALAVKI  + I ++ +LS+  A  +F +L  +LTDK+ EIA +++KEI+ RL+FL DV
Sbjct: 444 PEALAVKIAGRHIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKEIRERLRFLLDV 503

Query: 473 GLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHK 532
           GL YLTL+R SGTLSGGE+QRIRLA+QIGS LTGVLYVLDEPSIGLHQRDN++L+ TL  
Sbjct: 504 GLEYLTLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKH 563

Query: 533 LRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLS 592
           LR+L NT++VVEHDED IL AD+VVD+GPGAG+HGG++VA GTP EI  N  SLTG+YL+
Sbjct: 564 LRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLT 623

Query: 593 GELKIEIPKNRRKSDK-FLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENL 651
           GEL + +P  R+ + K  LKL+  R NNLK+V+ EIP G+F  ITGVSG GKSTL+ + L
Sbjct: 624 GELSVGVPARRKPNPKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTL 683

Query: 652 YPALKEKIK-SDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPA 710
           Y A+  ++  + E+    D              LE    +DKV+ IDQSPIGRTPRSNPA
Sbjct: 684 YKAVARRLNGASEAPAPFD-------------KLEGLEHLDKVIDIDQSPIGRTPRSNPA 730

Query: 711 TYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVE 770
           TYT  F  IR+ FA   EAK +GYG GRFSFNVKGGRCE CQGDGVIKIEM+FLPDV+V 
Sbjct: 731 TYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 790

Query: 771 CEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIK 830
           C+ CKG RYN ETLEV +K KSI+DVL+M+VEE  + FK +P +  KL+TL  VGL Y+K
Sbjct: 791 CDVCKGKRYNRETLEVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVK 850

Query: 831 LGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKG 890
           +GQ +TTLSGGEAQR+KL++ELS+RATG T+Y+LDEPTTGLHFHDVKKL++VL+ LVE+G
Sbjct: 851 VGQQATTLSGGEAQRVKLSKELSRRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVEQG 910

Query: 891 NTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSK 950
           N+VVVIEHNL+VIK AD I+DLGPEGG+ GGEI+  GTPE +A  K SHTG+FL  +L++
Sbjct: 911 NSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTGRFLAEVLAR 970



 Score = 63.5 bits (153), Expect = 7e-14
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 598 EIPKNRRKSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKE 657
           E+P   R+  + L +   R++NLK+V +EIP     V TG+SGSGKS+L ++ +Y   + 
Sbjct: 19  EVP---RRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQR 75

Query: 658 KIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFD 717
           +     S     F + +     +K +++    +   + I+Q    + PRS   T T+++D
Sbjct: 76  RYVESLSAYARQFLEMM-----QKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYD 130

Query: 718 KIRQVFAET 726
            +R ++A T
Sbjct: 131 YMRLLWART 139