Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score = 1026 bits (2654), Expect = 0.0
 Identities = 524/958 (54%), Positives = 702/958 (73%), Gaps = 23/958 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I+I+GAR HNLKNI LTLPR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL +M KPDVD+IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLLYAR+GIP C
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PEHNIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P+H+I +E+Q+  ++ + +  +     + +L+P++R++KG +  +F++L ++GF R R+N
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNN 238
           G++Y  D+   L++ KKH I++V+DR   + D   RL E+ E AL+ + G+ +V    + 
Sbjct: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
              E I+S+  ACPICG +  EL+P++FSFN+P GAC  C GLG+K  FD   ++ + + 
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGDM 299

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A+GA+  +  RN    Y  Q L ++A+H+ F++  P   L  +Q  ++++GS  + + 
Sbjct: 300 TLAEGAIRGWDRRNV---YYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVD 356

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GD    ++ P+EG++P   R Y ET+S   R+EL KF+    CP C G RL+ 
Sbjct: 357 FKYLNDRGDIV-KRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRR 415

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V + +K++  +T+L I  A E+F  LKLT +  EIA +++KEI+ RL+FL +VGL 
Sbjct: 416 EARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLD 475

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YL+L R + TLSGGEAQRIRLA+QIG+ L GVLY+LDEPSIGLHQRDN +L+ TL  LR+
Sbjct: 476 YLSLDRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRD 535

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGEL 595
           + NT++VVEHDED I  ADYVVD+GPGAGVHGG +VA GTP E+  + DSLTGKYLSG +
Sbjct: 536 IGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRV 595

Query: 596 KIEIPKNRRKSDK--FLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
           KIE+P  R   +K   L L   R NNL++V +EIP G+   +TGVSGSGKSTLI   L+P
Sbjct: 596 KIEVPAKRTPRNKKLALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFP 655

Query: 654 ALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
                +      G    E   +++ K    LE    +DKVV IDQSPIGRTPRSNPATYT
Sbjct: 656 LSATALN-----GATTLEAAAHDSIK---GLE---HLDKVVDIDQSPIGRTPRSNPATYT 704

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            +F  IR++FA   E++ +GYGPGRFSFNVKGGRCE CQGDG+IK+EM+FLPD++V C+ 
Sbjct: 705 GLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDV 764

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CK  RYN ETLE+KYKGKSI + L M++EEAR  F  +P ++ KL+TL DVGL YIKLGQ
Sbjct: 765 CKSKRYNRETLEIKYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQ 824

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL+RELSKR TG T+Y+LDEPTTGLHF D+++L+DVL+ L + GNTV
Sbjct: 825 SATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTV 884

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           VVIEHNLDVIK AD ++DLGPEGG  GG+IIA GTPE++++   SHTG +LK +L ++
Sbjct: 885 VVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLLERD 942