Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45

 Score =  967 bits (2500), Expect = 0.0
 Identities = 516/1006 (51%), Positives = 680/1006 (67%), Gaps = 74/1006 (7%)

Query: 4    IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
            I I+GAR HNLKN+ L +PRN L+V+TG+SGSGKS++AFDT+YAEGQRRYVESLSAYARQ
Sbjct: 40   ISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 99

Query: 64   FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
            FL LM+KPDVD IEGLSPAI+I+QK TS NPRSTVGTVTEI+DYLRLLYAR G PYCP+H
Sbjct: 100  FLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDH 159

Query: 124  NIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
            ++ +++Q+  ++ + +     E  + IL+P+ R+KKG + +LF ++ + G+ R RV+G+ 
Sbjct: 160  HLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQT 219

Query: 183  YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVT--GTKNNE 239
            Y  +D   L++ +KHDI+IVIDRL  + D   RL E+ E AL  + G  I    G +   
Sbjct: 220  YEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGAP 279

Query: 240  EIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKC 299
            + E ++++  ACPIC  S  EL+PR+FSFNSP GAC  C GLG +  FD   ++   +  
Sbjct: 280  DKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSLS 339

Query: 300  IADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSP-EKIHFKV 358
            +A GA+  +    +GY    + +VA H+ F V  P + L      +L++GS  E+I F  
Sbjct: 340  LASGAIKGWDR-RNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398

Query: 359  SNGSGD---TEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
            +  SG+    + ++  P+EG+IP   R Y ET S   R++L +F  +  CP CGG RL+ 
Sbjct: 399  TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458

Query: 416  KALAVKIEDKS-------------IIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEI 462
            +A  V + D+S             I +L+ L++  +  +F  LKL   + +IA +V++EI
Sbjct: 459  EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518

Query: 463  KSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRD 522
              RLKFLNDVGL YL+L R + TLSGGEAQRIRLA+QIGS LTGV+YVLDEPSIGLHQRD
Sbjct: 519  GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578

Query: 523  NQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKN 582
            N +LI TL  LR++ N+++VVEHDED I  AD+V+DMGPGAGVHGG V+A GT  E+S N
Sbjct: 579  NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638

Query: 583  KDSLTGKYLSGELKIEIPKNR---------------RKSDKF------------------ 609
             DSLTG+YLSG  KIE+P++R               +K  +F                  
Sbjct: 639  PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698

Query: 610  -------LKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSD 662
                   +++     NNLK+VSV  P G+   +TGVSGSGKSTL+ + LY A+   +   
Sbjct: 699  TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLY-- 756

Query: 663  ESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQV 722
                      + +E      ++E     DKV+ +DQSPIGRTPRSNPATYT +F  IR++
Sbjct: 757  ----------RAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIREL 806

Query: 723  FAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHE 782
             AET  A+ +GYGPGRFSFNV GGRCE CQGDGV+K+EM+FLPDV+V CE C G RYN E
Sbjct: 807  MAETNTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRE 866

Query: 783  TLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGE 842
            TLEV YKGK+I+ +L M+VE A E  K +P I  KL+TL DVGL YIKLGQS+TTLSGGE
Sbjct: 867  TLEVLYKGKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGE 926

Query: 843  AQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDV 902
            AQR+KL  ELSKR TG T+Y+LDEPTTGLHF D++ L+ VL+ L + GNT+VVIEHNLDV
Sbjct: 927  AQRVKLALELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDV 986

Query: 903  IKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948
            IK AD +ID+GPEGG  GG ++  GTPE+IA  + SHTG++LK +L
Sbjct: 987  IKTADWLIDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 15/117 (12%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           +++I + GA  +NLKN+S+  P   L  VTGVSGSGKST+  DT+Y           +A 
Sbjct: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751

Query: 61  ARQFLGLMNKP----DVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113
           AR       +P     V+ IE     I + Q    + PRS   T T ++  +R L A
Sbjct: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMA 808