Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 961 a.a., Excinuclease ABC subunit A from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 522/955 (54%), Positives = 698/955 (73%), Gaps = 23/955 (2%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I+I+GAR HNLKNI LTLPR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAYARQ
Sbjct: 21  ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 80

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           FL +M KPDVD+IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLLYAR+G P CP+H
Sbjct: 81  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDH 140

Query: 124 NIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
           +I +E+Q+  ++ + +  +     + +L+P++R++KG +  +F++L ++GF R RVNG++
Sbjct: 141 DIPLEAQTVSQMVDLVLSQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVNGKL 200

Query: 183 YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNNEEI 241
              D+   L++ KKH I++V+DR   + D   RL E+ E AL+ + G+ +V    +    
Sbjct: 201 CELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEPGE 260

Query: 242 EKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIA 301
           E I+S+  ACPICG +  EL+P++FSFN+P GAC  C GLG+K  FD   ++ +    +A
Sbjct: 261 EVIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NAELTLA 319

Query: 302 DGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIHFKV 358
           +GA+  +  RN    Y  Q L +++ H+GF++  P K +  +   IL+ GS  + + F+ 
Sbjct: 320 EGAIRGWDRRNV---YYFQMLGSLSKHYGFSLEMPFKQIPADMQKILLNGSGSQSVDFRY 376

Query: 359 SNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKAL 418
            N  GD    +  P+EG++P   R Y ET+S   R+EL KF+    CP C G RL+ +A 
Sbjct: 377 LNDRGDIV-KRAHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREAR 435

Query: 419 AVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLT 478
            V + +K++  +T L I  A  +F  LKLT +  EIA +++KEI+ RL+FL +VGL YLT
Sbjct: 436 HVWVGEKTLPAVTSLPIGDATHYFETLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLT 495

Query: 479 LSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDN 538
           L R + TLSGGEAQRIRLA+QIG+ L GV+Y+LDEPSIGLHQRDN +L+ TL  LR++ N
Sbjct: 496 LDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 555

Query: 539 TLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIE 598
           T++VVEHDED I  ADYVVD+GPGAGVHGG +VA GTP E+  + DSLTGKYLSG +KI 
Sbjct: 556 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPDEVMSHPDSLTGKYLSGRVKIA 615

Query: 599 IPKNRRKSDKFLKLS--NCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALK 656
           +P  R   +K L L+    R NNL++V+++IP G+   +TGVSGSGKSTLI   L+P   
Sbjct: 616 VPAKRTPRNKKLSLTLKGARGNNLQNVNLDIPIGLLTCVTGVSGSGKSTLINNTLFPL-- 673

Query: 657 EKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVF 716
                  S   L+    L   T +  N      +DKVV IDQSPIGRTPRSNPATYT +F
Sbjct: 674 -------SATALNGATTLEAATHDSINGL--QHLDKVVDIDQSPIGRTPRSNPATYTGLF 724

Query: 717 DKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKG 776
             IR++FA   E++ +GYGPGRFSFNVKGGRCE CQGDG+IK+EM+FLPD++V C+ CK 
Sbjct: 725 TPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKS 784

Query: 777 ARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSST 836
            RYN ETLEVKYKGK+I +VL M++EEARE F  +P ++ KL+TL DVGL YIKLGQS+T
Sbjct: 785 KRYNRETLEVKYKGKNIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSAT 844

Query: 837 TLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVI 896
           TLSGGEAQR+KL+RELSKR TG T+Y+LDEPTTGLHF D+++L+DVL+ L + GNTVVVI
Sbjct: 845 TLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVI 904

Query: 897 EHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           EHNLDVIK AD ++DLGPEGG  GG+IIATGTPE++A+ + S+TG +LK +L+++
Sbjct: 905 EHNLDVIKTADWLVDLGPEGGSRGGQIIATGTPEQVAEMEQSYTGHYLKPLLTRD 959