Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 971 a.a., Excinuclease ABC subunit A from Sphingobium sp. HT1-2

 Score =  969 bits (2504), Expect = 0.0
 Identities = 519/974 (53%), Positives = 674/974 (69%), Gaps = 45/974 (4%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I ++GAREHNLK + + LPR++LIV+TG+SGSGKS++AFDTIYAEGQRRYVESLSAYARQ
Sbjct: 6   ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           FL +M KPDV+ IEGLSPAI+I+QKTTS+NPRSTV TVTEIYDY+RLL+AR+GIPY P  
Sbjct: 66  FLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPYSPAT 125

Query: 124 NIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
              I +Q+  ++ +++      T   +L+P+VR +KG Y+K   +    G+ R+R++GE+
Sbjct: 126 GEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGYTRVRIDGEL 185

Query: 183 YRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIV--------- 232
           Y  +D   L++  KHDIE+V+DRL    D + RL ++ E+AL+ + GL  V         
Sbjct: 186 YLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAEDVVPG 245

Query: 233 -------TGTKNNEEIEK---IYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLG 282
                   G   N  I     ++S   ACP+ G +  E++PR+FSFN+P GAC  C GLG
Sbjct: 246 REDKAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPACDGLG 305

Query: 283 IKMEFDADLIIPDKNKCIADGAVALYR--NFLDGYRSQHLAAVANHFGFTVLTPIKDLSK 340
            + EFD +L++P++   +  GAV  +   N    Y  Q L ++A  FGF++ TP  +L  
Sbjct: 306 ERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSLAKEFGFSLDTPWAELPG 365

Query: 341 EQLDILMYGS---PEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELE 397
           E   I+++G+   P  + F      G   +   KP+EG+I    R   +T+S + R+EL 
Sbjct: 366 EVKLIILHGTGGKPVTLRFV----DGKKSYEVEKPFEGVIGNLNRRLAQTESAWMREELS 421

Query: 398 KFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLK--LTDKEYEIA 455
           K+     C  C G RLK +ALAVKI  + I   T  S+  A  FF  +   L D++ +IA
Sbjct: 422 KYQTAMPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQIA 481

Query: 456 KQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPS 515
           + ++KEI  RL FLN+VGL YL L R SGTLSGGE+QRIRLA+QIGS L+GVLYVLDEPS
Sbjct: 482 RAILKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEPS 541

Query: 516 IGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGT 575
           IGLHQRDN +L+ TL +LR+L N+++VVEHDED I  ADY+VDMGPGAGVHGG +VA GT
Sbjct: 542 IGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQGT 601

Query: 576 PMEISKNKDSLTGKYLSGELKIEIPKNRRK-SDKFLKLSNCRQNNLKDVSVEIPTGVFNV 634
             E+  +KDSLT  YL+G  +IE+P  RRK S K L + N R NNL  V+  IP G F  
Sbjct: 602 LPELLAHKDSLTADYLNGTRRIEVPAKRRKGSGKKLTVHNARANNLTGVTASIPLGTFTC 661

Query: 635 ITGVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVV 694
           ITGVSGSGKS+   + LY A    +     V     +    EN             DKV+
Sbjct: 662 ITGVSGSGKSSFTIDTLYAASARTLNGARIVAGPHDKITGLENC------------DKVI 709

Query: 695 VIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGD 754
            IDQSPIGRTPRSNPATYT  F  IR  FA   EA+ +GY PGRFSFNVKGGRCE CQGD
Sbjct: 710 DIDQSPIGRTPRSNPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEACQGD 769

Query: 755 GVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQI 814
           GV+KIEM+FLPDV+V C+ C GARYN ETLEVK+KG SI+D+L+M+VE+A E FK +P I
Sbjct: 770 GVLKIEMHFLPDVYVTCDVCHGARYNRETLEVKFKGMSIADILDMTVEDAVEFFKAVPPI 829

Query: 815 SNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFH 874
            +K+  L +VGLGYIK+GQ +TTLSGGEAQR+KL +ELS+RATGNT+Y+LDEPTTGLHF 
Sbjct: 830 RDKMAMLAEVGLGYIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFE 889

Query: 875 DVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAK 934
           DV+KL++VL++LVE+GN+VVVIEHNLDVIK AD+IID+GPEGG  GGE++A GTPE++ K
Sbjct: 890 DVRKLLEVLHALVEQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVK 949

Query: 935 CKLSHTGKFLKNIL 948
            K S TG++L  +L
Sbjct: 950 EKRSFTGRYLAPLL 963



 Score =  162 bits (409), Expect = 1e-43
 Identities = 84/195 (43%), Positives = 121/195 (62%), Gaps = 15/195 (7%)

Query: 405 CPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKS 464
           C  C G R   + L VK +  SI D+ D+++  A EFF              + +  I+ 
Sbjct: 786 CDVCHGARYNRETLEVKFKGMSIADILDMTVEDAVEFF--------------KAVPPIRD 831

Query: 465 RLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTG-VLYVLDEPSIGLHQRDN 523
           ++  L +VGLGY+ + +++ TLSGGEAQR++LA ++    TG  LY+LDEP+ GLH  D 
Sbjct: 832 KMAMLAEVGLGYIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFEDV 891

Query: 524 QKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNK 583
           +KL+E LH L    N++VV+EH+ D I  ADY++DMGP  GV GG+VVA GTP ++ K K
Sbjct: 892 RKLLEVLHALVEQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVKEK 951

Query: 584 DSLTGKYLSGELKIE 598
            S TG+YL+  L +E
Sbjct: 952 RSFTGRYLAPLLGLE 966



 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 2   KDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYA 61
           K + +  AR +NL  ++ ++P      +TGVSGSGKS+   DT+YA   R    +L+  A
Sbjct: 635 KKLTVHNARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASAR----TLNG-A 689

Query: 62  RQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIP 118
           R   G  +K  +  +E     I I Q    + PRS   T T  +  +R  +A  G+P
Sbjct: 690 RIVAGPHDK--ITGLENCDKVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFA--GLP 742