Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 944 a.a., excinuclease (uvrABC system protein A) from Pseudomonas putida KT2440

 Score = 1027 bits (2655), Expect = 0.0
 Identities = 521/958 (54%), Positives = 698/958 (72%), Gaps = 23/958 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I+I+GAR HNLKNI LTLPR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL +M KPDVD+IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLLYAR+G P C
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120

Query: 121 PEHNIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P+H+I +E+Q+  ++ + + E      + +L+P+VR++KG +  +F +L ++GF R RVN
Sbjct: 121 PDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNN 238
           G++Y  D+   L++ KKH I++V+DR   + D   RL E+ E AL+ + G+ +V    + 
Sbjct: 181 GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
           +  E I+S+  ACP+CG +  EL+P++FSFN+P GAC  C GLG+K  FD   ++ +   
Sbjct: 241 QGEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NTEL 299

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A+GA+  +  RN    Y  Q L ++A H+GF++  P  +LS E   +++ GS  + + 
Sbjct: 300 TLAEGAIRGWDRRNV---YYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVD 356

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GD    ++ P+EG++P   R Y ET+S   R+EL KF+    CP C G RL+ 
Sbjct: 357 FKYLNDRGDIV-KRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRR 415

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V + +K++  +T+L I +A  +F  L LT +  EIA +++KEI  RL+FL +VGL 
Sbjct: 416 EARHVWVGEKTLPAVTNLPIGEASNYFGQLTLTGRRGEIAAKILKEICERLQFLVNVGLD 475

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YLTL R + TLSGGEAQRIRLA+QIG+ L GV+Y+LDEPSIGLHQRDN +L+ TL+ LR+
Sbjct: 476 YLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRD 535

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGEL 595
           L NT++VVEHDED I  ADYVVD+GPGAGVHGG +VA G+P E+  + DSLTGKYLSG  
Sbjct: 536 LGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRK 595

Query: 596 KIEIPKNRRKSDKFL--KLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
           KI +P  R   +K L  KL   R NNL++V +E+P G+   +TGVSGSGKSTLI   LYP
Sbjct: 596 KIVVPAKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYP 655

Query: 654 ALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
                +    S+                 +++    +DKVV IDQSPIGRTPRSNPATYT
Sbjct: 656 LAATALNGASSL-----------EAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYT 704

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            +F  IR++F+   E++ +GYGPGRFSFNVKGGRCE CQGDG+IK+EM+FLPD++V C+ 
Sbjct: 705 GIFTPIRELFSGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDV 764

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CK  RYN ETLE+KYKGK+I +VL M++E+ARE F  +P ++ KL+TL DVGL YIKLGQ
Sbjct: 765 CKSKRYNRETLEIKYKGKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQ 824

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL+RELSKR TG T+Y+LDEPTTGLHF D+++L+DVL+ L + GNTV
Sbjct: 825 SATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTV 884

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           VVIEHNLDVIK AD ++DLGPEGG  GG+IIA GTPEE+++ K S+TG +LK +L ++
Sbjct: 885 VVIEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLLERD 942