Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score = 1021 bits (2641), Expect = 0.0
 Identities = 518/953 (54%), Positives = 690/953 (72%), Gaps = 22/953 (2%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I ++GAREHNLKNI + LPR+ L+V+TG+SGSGKS++AFDTIYAEGQRRYVESLSAYARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           FL LM KPDV+SIEGLSPAI+I+QKTTSKNPRSTVGTVTEIYDY+RLL+AR+G+P+ P  
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 124 NIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
            + IESQ+  ++ +++E     T + +L+P VR +KG Y+K   +L  +GF R++V+G +
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQKKGFQRVKVDGTL 184

Query: 183 YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNNEEI 241
           Y  D+   L++ KKHDIE+V+DRL  K    +RL ++ E AL  + GL I    +  E  
Sbjct: 185 YEIDEVPQLDKKKKHDIEVVVDRLVVKPGLGNRLADSIETALSLADGLAIAENAETGERT 244

Query: 242 EKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIA 301
             ++S+  ACP+ G + EE++PR+FSFN+PFGAC  C GLG+K+ FD +L+IP+    + 
Sbjct: 245 --VFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLR 302

Query: 302 DGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPEKIHFKVSNG 361
           +GA+A +      Y  Q L  +A H+ F + TP + L +   +++++GS  +   +++  
Sbjct: 303 EGAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNE-EIRIAYE 361

Query: 362 SGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVK 421
            G   +   K +EG+IP   R Y ET S Y R++L +F   + C  CGG RLK +ALAVK
Sbjct: 362 DGFRGYHTEKSFEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAVK 421

Query: 422 IEDKSIIDLTDLSISKAEEFFNNLK--LTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTL 479
           +    I + T+ SI  A ++F +L   L  K+ EIA+++++EI  RL FL DVGL YLT+
Sbjct: 422 VRGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLTM 481

Query: 480 SRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNT 539
            R SG+LSGGE+QRIRLA+QIGS LTGVLYVLDEPSIGLHQRDN +L+ TL +LR++ NT
Sbjct: 482 GRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGNT 541

Query: 540 LVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEI 599
           ++VVEHDED I +ADY+VDMGPGAG+HGG VV+ GTP ++  + +S+TG+YL+G+  I +
Sbjct: 542 VIVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIPL 601

Query: 600 PKNRRKSD-KFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEK 658
           P  RR  + K L L   R NNLK+V   IP G    +TGVSG GKSTL+ E LY AL  +
Sbjct: 602 PALRRPGNGKRLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALSRR 661

Query: 659 IK-SDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFD 717
           +  + E     D  D +               +DK++ IDQSPIGRTPRSNPATYT  F 
Sbjct: 662 LMGAREQPSPFDRIDGM-------------EYLDKIIDIDQSPIGRTPRSNPATYTGAFS 708

Query: 718 KIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGA 777
            IR  F E  E+K++GY PGRFSFNVKGGRCE CQGDGVIKIEM+FLPDV+V+C+ CKG 
Sbjct: 709 PIRDWFTELPESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGK 768

Query: 778 RYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTT 837
           RYN ETLE+ ++GKSI+DVL+M+VEEA + FK +P I +K+ TL  VGL YI LGQ +TT
Sbjct: 769 RYNRETLEITFRGKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQATT 828

Query: 838 LSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIE 897
           LSGGEAQR+KL +ELSKR+TG T+Y+LDEPTTGLHF DV+KL++V+ +LV+ GNTV+VIE
Sbjct: 829 LSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIE 888

Query: 898 HNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSK 950
           HNL+VIK AD I+DLGPEGG+ GG I+A GTPE++A C+ S+TG +L  IL +
Sbjct: 889 HNLEVIKTADWIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPILGR 941



 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 20/129 (15%)

Query: 2   KDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYA 61
           K + + GAR +NLKN+   +P   L  VTGVSG GKST+  +T+Y            A +
Sbjct: 611 KRLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALS 659

Query: 62  RQFLGLMNKPD----VDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGI 117
           R+ +G   +P     +D +E L   I I Q    + PRS   T T  +  +R  +  +  
Sbjct: 660 RRLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTEL-- 717

Query: 118 PYCPEHNIR 126
              PE  +R
Sbjct: 718 ---PESKVR 723



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 609 FLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGEL 668
           F+++   R++NLK++ V++P     VITG+SGSGKS+L ++ +Y   + +     S    
Sbjct: 4   FIRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 63

Query: 669 DFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFA 724
            F + +     +K ++E    +   + I+Q    + PRS   T T+++D +R ++A
Sbjct: 64  QFLELM-----QKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWA 114