Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 943 a.a., excinuclease ABC subunit UvrA from Dickeya dianthicola ME23

 Score = 1033 bits (2672), Expect = 0.0
 Identities = 534/957 (55%), Positives = 703/957 (73%), Gaps = 22/957 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I I+GAR HNLKNI+L +PR+ LIVVTG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TEI+DYLRLL+AR+G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120

Query: 121 PEHNIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           PEH I +++Q+  ++ + +  +   + + +L+PIV+++KG + K  ++L ++G+ R R++
Sbjct: 121 PEHAIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARID 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIVTGTKNN 238
           GE+    D   LE  KKH I++V+DR   ++D + RL E+ E ALE SGG  +V    + 
Sbjct: 181 GEVCDLSDPPKLELQKKHTIDVVVDRFKVRNDLAQRLAESFETALELSGGTAVVADMDDP 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
              E ++S+N ACP+CG S  EL+PR+FSFN+P GAC  C GLG++  FD   ++ +   
Sbjct: 241 NAPELLFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGEL 300

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A GA+  +  RNF   Y  Q L ++A H+ F V  P  +LS     +++YGS  E I 
Sbjct: 301 SLAGGAIRGWDRRNF---YYFQMLRSLAEHYQFDVEAPFDNLSPAVQKVILYGSGKENIE 357

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GDT   ++ P+EG++    R Y ET+S   R+EL KF+    C  C G RL++
Sbjct: 358 FKYINDRGDTSVRRH-PFEGVLNNMERRYKETESTAVREELAKFISNRPCASCNGTRLRE 416

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V +E  ++  + D+SI  A  FF+N+KL+ +  +IA++V+KEI  RL+FL +VGL 
Sbjct: 417 EARHVYVEQTTLPQIADMSIGHAMAFFHNIKLSGQRAKIAEKVLKEIGDRLRFLVNVGLN 476

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YL+LSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L+ETL  LRN
Sbjct: 477 YLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRN 536

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGEL 595
           L NT++VVEHDED I  AD+++D+GPGAGVHGG V+A GT  +I    +SLTG++LSG  
Sbjct: 537 LGNTVIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAEPESLTGQFLSGAR 596

Query: 596 KIEIPKNRRKSD--KFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
           KIEIP  R  +D  K LKL   R NNLKDV++ +P G+F  ITGVSGSGKSTLI + L+P
Sbjct: 597 KIEIPTQRIPADPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFP 656

Query: 654 ALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
             + ++      GEL+ E   Y + +    LE     DKV+ IDQSPIGRTPRSNPATYT
Sbjct: 657 IAQRQLNG----GELN-EPAAYRDIQ---GLE---HFDKVIDIDQSPIGRTPRSNPATYT 705

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            VF  IR++FA   EA+ +GY PGRFSFNV+GGRCE CQGDGVIK+EM+FLPD++V C++
Sbjct: 706 GVFTPIRELFAGVPEARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQ 765

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CK  RYN ETLE+KYKGKSI +VL M++EEARE F  IP ++ KL+TL DVGL YI+LGQ
Sbjct: 766 CKSKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQ 825

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL RELSKR TG T+Y+LDEPTTGLHF D+++L+ VL+ L ++GNT+
Sbjct: 826 SATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTI 885

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSK 950
           VVIEHNLDVIK AD I+DLGPEGG  GGEI+ +GTPE +A+C+ SHT +FLK IL +
Sbjct: 886 VVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAQCEKSHTARFLKPILER 942