Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

 Score = 1036 bits (2680), Expect = 0.0
 Identities = 536/974 (55%), Positives = 699/974 (71%), Gaps = 38/974 (3%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           +K I I+GAREHNLK I L LPRN LIV+TG+SGSGKS++AFDTIYAEGQRRYVESLSAY
Sbjct: 4   LKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL +M KPDVD I+GLSPAI+I+QKTTS+NPRSTVGTVTEIYDY+RLL+AR+G+PY 
Sbjct: 64  ARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYS 123

Query: 121 PEHNIRIESQSPEKIAEKIEE-EFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P   + IESQ+  ++ ++I   E    + IL+PIVR +KG Y+K   +L  +GF R++V+
Sbjct: 124 PATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVD 183

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIVT----- 233
           G+ Y   D   L++  KHDI++V+DR   + D + RL ++ E  L+ + GL I       
Sbjct: 184 GQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFADKP 243

Query: 234 ---------GTKN---NEEIEKI-YSSNLACPICGISFEELQPRMFSFNSPFGACEYCSG 280
                    G+ N   NE  E++ +S   ACP+ G +  E++PR+FSFN+PFGAC  C G
Sbjct: 244 LPPEDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDG 303

Query: 281 LGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSK 340
           LG + + D +LI+P+  + + DGA+A +      Y +Q L A+   FGF + +   DLSK
Sbjct: 304 LGSQQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSK 363

Query: 341 EQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFM 400
           E    ++ G+ +KI F   +G+   +  +N  +EG++P   R + ET S + R+E+E++M
Sbjct: 364 EAQHAILQGTDDKIEFNYQDGARSYKTVKN--FEGIVPNLERRWKETDSAWAREEIERYM 421

Query: 401 KVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNL--KLTDKEYEIAKQV 458
             + CP C G RLK +ALAVKI    I ++T +SI KA ++F  L   L  K+ EIA ++
Sbjct: 422 SAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVRI 481

Query: 459 IKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGL 518
           +KEI+ RL+FLNDVGL YL+LSR SGTLSGGE+QRIRLA+QIGS LTGVLYVLDEPSIGL
Sbjct: 482 LKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGL 541

Query: 519 HQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPME 578
           HQRDN +L+ETL  LR++ NT++VVEHDED IL ADYVVD+GP AG+HGG V+A GTP +
Sbjct: 542 HQRDNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQD 601

Query: 579 ISKNKDSLTGKYLSGELKIEIPKNRRKSDKF--LKLSNCRQNNLKDVSVEIPTGVFNVIT 636
           +  N  SLTGKYLSGEL + +P  RRK  K   +K+   R NNL++V+  +P GVF  +T
Sbjct: 602 VMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAVT 661

Query: 637 GVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVI 696
           GVSG GKST + E LY +   ++     +              E   ++    IDKV+ I
Sbjct: 662 GVSGGGKSTFLIETLYKSAARRVMGAREI------------PAEHDRIDGFEFIDKVIDI 709

Query: 697 DQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGV 756
           DQSPIGRTPRSNPATYT  F  IR  FA   EAK +GY PGRFSFNVKGGRCE CQGDGV
Sbjct: 710 DQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGV 769

Query: 757 IKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISN 816
           IKIEM+FLPDV+V C+ C G RYN ETL+V +KGKSI+DVL+M+VEE  E F  +P + +
Sbjct: 770 IKIEMHFLPDVYVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRD 829

Query: 817 KLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDV 876
           KL++L DVGLGYIK+GQ + TLSGGEAQR+KL +ELSKR+TG T+Y+LDEPTTGLHFHDV
Sbjct: 830 KLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDV 889

Query: 877 KKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCK 936
            KL+++L++LVE+GN+VVVIEHNL+VIK AD IID+GPEGG  GGE++ATGTPE+I K +
Sbjct: 890 NKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVE 949

Query: 937 LSHTGKFLKNILSK 950
            S+TG FLK +L +
Sbjct: 950 RSYTGHFLKELLDR 963