Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 599 a.a., UvrABC system protein C from Methylophilus sp. DMC18

 Score =  308 bits (788), Expect = 5e-88
 Identities = 194/550 (35%), Positives = 299/550 (54%), Gaps = 40/550 (7%)

Query: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63
           + ++P  PG Y   N   TVIYVGKAK+LKKRVSSYFNK    P+T+ +V  I  +E  V
Sbjct: 8   LKNLPNLPGVYRMLNAENTVIYVGKAKDLKKRVSSYFNKNLASPRTKMMVSQITNIETTV 67

Query: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRNKSKKG-KFYG 122
           T +E EAL+LEN LIK   P+YN+  +D K+Y YI ++ + FPR+   R   +KG +++G
Sbjct: 68  TRSEAEALLLENNLIKSIMPRYNVLFRDDKSYPYISLTGDAFPRLAFHRGTQRKGHQYFG 127

Query: 123 PFTSAKERDYVLDVLKKTFKIRSCKNM----HKRPCLRHHIKNCTAPCSGDITSKDYLNQ 178
           PF S+      + +L+K FK+R+C+N       RPCL++ I  CTAPC   I+ +DY + 
Sbjct: 128 PFPSSPAVRESIQLLQKVFKLRTCENTVFANRSRPCLQYQIARCTAPCVNLISQEDYASD 187

Query: 179 IKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKY 238
           ++ A   L G    ++  L + MN  ++ +++E+A ++R+ I A+ +++ +Q V      
Sbjct: 188 VRHAALFLLGKTSEVMDSLADGMNAAAEAMEYEQAAVLRDRIQALRQVQAKQFVSDFSVS 247

Query: 239 NEDVISILEKSGKLHIMVFNVLKG--TLFDRKYFEFDYTE----NFFEEFLIQYYSENDV 292
           + DVI+  E  G+ H +   +++G   L D+ +F  +  +       E F+ QYY   + 
Sbjct: 248 DADVIACAEIEGQ-HCINLVMIRGGRHLGDKSFFPKNAQDAELVETVEAFITQYYVAQNT 306

Query: 293 PSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEI 352
           P  ++        E D  E+ +      LS++   K+       G+KK  L +A  N E+
Sbjct: 307 PPLLVC-----GAEIDKTEFET-----MLSEQAERKIRVLTNAIGDKKVWLKMAQTNAEL 356

Query: 353 YVN-------GNEIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDKK 405
            +          + ++ SL+  L L ++   IECFDISH  G +TVGS V F  G     
Sbjct: 357 ALQQRQATSANQQARLLSLREALNLAENTERIECFDISHTMGEATVGSCVVFDRGDMQNS 416

Query: 406 NYRRFKIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSELRKL 465
            YRR+ +  ++  DD+ ++ +V+ RRY K+     + PDLI IDGGKGQL  A   ++++
Sbjct: 417 EYRRYNVTGITPGDDYAAMRDVLTRRYKKVAAGEGKRPDLIFIDGGKGQLGVAMEVMQEV 476

Query: 466 KL-KIPLISIAKREEEIYTPGIENPLPIKKNEKASL--------FIQEIRDEAHRFAINY 516
            L  I LI IAK EE    PG+E  +     E  +L         +Q+IRDEAHRFAI  
Sbjct: 477 GLDDILLIGIAKGEER--KPGLETMIFSDTGEMLNLPVDNPGLHLLQQIRDEAHRFAITG 534

Query: 517 NRLLRKKELI 526
           +R  R K  I
Sbjct: 535 HRAKRAKARI 544