Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 642 a.a., excinuclease ABC chain C from Agrobacterium fabrum C58

 Score =  278 bits (712), Expect = 3e-79
 Identities = 188/572 (32%), Positives = 306/572 (53%), Gaps = 59/572 (10%)

Query: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63
           +  +P +PG Y   NE+G V+YVGKA++LKKRV +Y   + H  +  ++V+    MEF+ 
Sbjct: 23  VKHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFVT 82

Query: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYISEEN-FPRIGISRN-KSKKGKFY 121
           T  E EAL+LE  LIK+  P++N+ L+D K++ YI I+ +N  P I   R  +++KG ++
Sbjct: 83  TRTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYF 142

Query: 122 GPFTSAKERDYVLDVLKKTFKIRSCKN----MHKRPCLRHHIKNCTAPCSGDITSKDYLN 177
           GPF SA      ++ L++ F IR+C +       RPCL + IK C+ PC+ +++ + Y  
Sbjct: 143 GPFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAE 202

Query: 178 QIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVK 237
            +K+A+  L G   ++   +  +MNE S++L FE A + R+ + A+  +++ Q +     
Sbjct: 203 LVKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAGI 262

Query: 238 YNEDVISILEKSGKLHIMVFNVLKGTLF-DRKYF-EFDYT---ENFFEEFLIQYYSENDV 292
              DV +I  + G   I VF    G  + +R YF + D +         FL Q+Y +  V
Sbjct: 263 EEADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPV 322

Query: 293 PSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEI 352
           P +I++SE    +EE       + L   L +K G KV   +P++GEKK + D  + N   
Sbjct: 323 PKQILLSE---TVEE------QELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAR- 372

Query: 353 YVNGNEIKVQSLKNKLM--------LDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDK 404
             +G ++   S + +L+        L   P  IE +D SH+ GT+ VG +V        K
Sbjct: 373 EAHGRKLAETSSQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVK 432

Query: 405 KNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLL--------------EENLEL-----P 443
             YR+F IK+  ++  DDF  + EV+ RR+S+LL              EE  +L     P
Sbjct: 433 NQYRKFNIKSTDITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWP 492

Query: 444 DLIIIDGGKGQLSSAFSELRKLKLK--IPLISIAK---RE---EEIYTPGIENPLPIKKN 495
           D+I+IDGG+GQ+++  + L +L ++  +  I +AK   RE   E  +  G  +   +   
Sbjct: 493 DVILIDGGQGQMTAVRAILDELGIRDCVTAIGVAKGVDREAGRERFFADG-RSDFSLPPR 551

Query: 496 EKASLFIQEIRDEAHRFAINYNRLLRKKELIK 527
           +    FIQ +RDEAHRFAI  +R  RKKE+++
Sbjct: 552 DPVLYFIQRMRDEAHRFAIGSHRARRKKEMVR 583