Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 674 a.a., excinuclease ABC subunit UvrB from Rhodanobacter sp000427505 FW510-R12

 Score =  664 bits (1712), Expect = 0.0
 Identities = 347/669 (51%), Positives = 464/669 (69%), Gaps = 32/669 (4%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F+L A ++P G Q +AIA L    E     + QTLLGVTGSGKT+TIAN+IE+VQ+PT+V
Sbjct: 5   FQLVAPYQPAGDQPQAIARLADGFEAG--LAAQTLLGVTGSGKTYTIANMIERVQRPTIV 62

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NKTLAAQLY EF+EFFP N VEYFVSYYDYYQPE+Y+   D +IEKD+ IN  IEQM
Sbjct: 63  MAPNKTLAAQLYGEFREFFPHNAVEYFVSYYDYYQPEAYVVASDTFIEKDSSINEHIEQM 122

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           RL AT A+LSRRD IIVA+VS IYGLGNPE +  +   L  GE+I +  +I +L ++QY 
Sbjct: 123 RLSATKALLSRRDSIIVATVSAIYGLGNPEDYLSLRLILATGERIDQRKLIHQLTELQYT 182

Query: 186 RNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RN+ EL  G +RV+G+ +D+ P   + + LR+E+F  E++++   DP       ++  + 
Sbjct: 183 RNETELRRGTYRVRGEIVDVFPAESETEALRIELFDGEVEKMALFDPLTGETIRKVQRYT 242

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEETGS 300
           +YP  H+    E   NAI +I  EL + L  L     ++++ RL+Q+T +D+EM+ E G 
Sbjct: 243 VYPRTHYASTRESVLNAIETIKLELKDRLEYLYKENKLVEAQRLEQRTRFDLEMMAEVGY 302

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           C+GIENYSRH   R  GEP   L DY P D L+V+DESH T+PQ+  MYKGDRSRK++L+
Sbjct: 303 CQGIENYSRHLTRRAPGEPPPTLFDYLPADGLLVVDESHVTVPQLGAMYKGDRSRKETLV 362

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVV-EQIIRPTGLLDPE 419
           ++GFRLPSA DNRPL+FEE+++ +   I+VSATP +YEL  S   V E ++RPTGL+DPE
Sbjct: 363 EFGFRLPSAMDNRPLRFEEWEERVPRAIYVSATPRDYELHKSGDAVTELVVRPTGLVDPE 422

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           VE+RP+  QV+D++ E  K V  G+RVL+TTLTKR+AE LTEYLA+ +VK RYLHSDI+T
Sbjct: 423 VEVRPVRTQVDDLLSEVHKRVALGDRVLVTTLTKRMAENLTEYLAEHDVKVRYLHSDIET 482

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           +ER+EIIR+LRLG+FD LVGINLLREGLD+PEV  V +LDADKEGFLR+  SLIQTIGRA
Sbjct: 483 VERSEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSTGSLIQTIGRA 542

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPI--------- 590
           ARN   K +LYA  +T S++ A+ ET RRR+ Q   NE H ITP+T+V+ I         
Sbjct: 543 ARNVRGKAILYADNVTRSMQAAMDETARRREKQVVFNEAHGITPKTVVRRIADIMEGARS 602

Query: 591 --------------REKVVD-ISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIR 635
                         R  V +  ++   +        I +LEA+MY+ A+ LEFE A ++R
Sbjct: 603 EAGNRRGGKSSTRGRAAVAEPAAEYAGLSPQQAAGAIRKLEAQMYKHAQNLEFEDAARLR 662

Query: 636 DTIAKLKKK 644
           D I +L+++
Sbjct: 663 DQIHQLREQ 671