Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1196 a.a., transcription-repair coupling factor from Rhodanobacter sp000427505 FW510-R12

 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 70/298 (23%), Positives = 114/298 (38%), Gaps = 40/298 (13%)

Query: 45  GSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY----YDYYQ 100
           GS +   +A      +   +V+A +   A  L  E K F     V +F  +    YD + 
Sbjct: 25  GSARALLLAEAARSHEGLLVVVARDTQRAQALEAELKIFAGGLPVLHFPDWETLPYDAFS 84

Query: 101 PESYIPQKDQYIEKDAQINPKIEQMRLRATSAILS-RRDVIIVASVSCIYGLGNPELFKE 159
           P                 +P+I   R+     +   +R V++V   + +  +        
Sbjct: 85  P-----------------HPEIVSQRIATLYRLPGVKRGVLVVPVATLMQRIAPRSHITG 127

Query: 160 MGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMF 219
            G  L  G+K+  +    +L    Y        PG F V+G  LDI P    +  R+E+F
Sbjct: 128 SGLVLAKGQKLDLATEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELF 187

Query: 220 GDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNLDML 279
            DE++ I   DP+    +  +D   + PA+ F +  E    A       L E  P +D  
Sbjct: 188 DDEVESIRSFDPETQRSQQPVDKVELLPAREFPLTGE----AAKLFRGNLRERFP-ID-- 240

Query: 280 KSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDE 337
               ++   LY  + ++E  +  GIE Y   F      E    L DY  +D L V+ E
Sbjct: 241 ----VRHCPLY--QDMKEGVTPGGIEYYLPLF-----FEQTATLFDYLADDALFVLGE 287



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 35/119 (29%)

Query: 450 TLTKRLAEELTEYLAKRNVKARYLHSDIDTIERT-------------------------- 483
           T+ + L  EL+     R  +  +LH+++ +IERT                          
Sbjct: 845 TIREALQRELS-----RGGQVYFLHNEVQSIERTVRELEELVPDARIRIAHGQMPERELE 899

Query: 484 EIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARN 542
           +++ +    +F+ LV   ++  G+DIP    + I  AD  G  +    L Q  GR  R+
Sbjct: 900 QVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADHFGLAQ----LHQLRGRVGRS 954