Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 897 a.a., UvrABC system protein B from Xanthobacter sp. DMC5

 Score =  657 bits (1694), Expect = 0.0
 Identities = 340/655 (51%), Positives = 455/655 (69%), Gaps = 20/655 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F +K++F+P G Q +AI  L    E       Q LLGVTGSGKTFT+A VIEK+Q+P +V
Sbjct: 100 FTMKSDFQPAGDQPQAIKELCAQAEAGDRD--QVLLGVTGSGKTFTMAKVIEKLQRPAIV 157

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NKTLAAQLY EFK FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 158 LAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 217

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           R  AT ++L R DVIIVASVSCIYG+G+ E +  M F++KVGE+I +  +I  LV +QY+
Sbjct: 218 RHAATRSLLERDDVIIVASVSCIYGIGSVETYSAMTFDIKVGERIDQRGLIADLVALQYK 277

Query: 186 RNDMELVPGRFRVKGDTLDIIPG-YQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           R   +   G FRV+GD+++I P  Y+D   RV +FGDE++ I E DP    K  ++ S  
Sbjct: 278 RIQSDFARGTFRVRGDSVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGQKSGDMKSVR 337

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEETGS 300
           +Y A H+V P      AI+ I  EL   L  L     +L++ RL+Q+T YD+EM+E TGS
Sbjct: 338 VYAASHYVTPRPTLIQAISGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGS 397

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           C GIENYSR    RK GEP   L +Y P++ L+ IDESH T+PQI  MY+GD  RK +L 
Sbjct: 398 CAGIENYSRWLTGRKPGEPPPTLFEYVPDNALVFIDESHVTVPQIGAMYRGDFRRKATLA 457

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419
           +YGFRLPS  DNRPL+FEE++      + VSATPG +E++ +  V VEQ+IRPTGL+DP 
Sbjct: 458 EYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSATPGSWEMNQTGGVFVEQVIRPTGLIDPP 517

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           VE+RP   QV+D++ E   +  KG R L+T LTKR+AE+LTEYL +  ++ RY+HSDIDT
Sbjct: 518 VEVRPARTQVDDLLGEVRAVAAKGYRTLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDT 577

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           IER EIIR+LRLG FD L+GINLLREGLDIPE G V ILDADKEGFLR++ SL+QTIGRA
Sbjct: 578 IERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRA 637

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD 599
           ARN + +VVLYA  +T S+++A++ET RRR+ Q  +N +H ITP+++ K I + +  + +
Sbjct: 638 ARNVDGRVVLYADHITGSMERAMAETSRRREKQVAYNTEHGITPESVKKAIGDILNSVYE 697

Query: 600 VKHIPV------------ADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLK 642
             H+ V             ++  V+ +LE  M  AA  L+FE A ++RD I +L+
Sbjct: 698 RDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMRAAAADLDFETAARLRDEIRRLE 752