Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 20/224 (8%)

Query: 37  KQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY- 95
           KQ    + G+  +  IA      ++ TL++  +   A +L  E   F P+  V +F  + 
Sbjct: 15  KQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWE 74

Query: 96  ---YDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLG 152
              YD + P   I            I+ +I  +      A      V++V   + ++ L 
Sbjct: 75  TLPYDLFSPHQDI------------ISQRIASLYRLPELA----HGVLVVPITTALHRLA 118

Query: 153 NPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDD 212
             +        L +G+K+    +  +L    Y   D     G F V+G  +D+ P     
Sbjct: 119 PTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKL 178

Query: 213 ILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEE 256
             R+++F DEI+ +   DP+N     ++DS  + PA+ F + ++
Sbjct: 179 PYRIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKD 222



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 38/146 (26%)

Query: 449 TTLTKRLAEELTEYLAKRNVKARYLHSDIDTIER-----TEIIRNLRLG----------- 492
           +T+ + L  EL      R  +  YLH+D+ TIE+      E++   R+            
Sbjct: 798 STVKEALLRELL-----RGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMREREL 852

Query: 493 ----------KFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARN 542
                     +F+ L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+
Sbjct: 853 EQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRS 908

Query: 543 ANSKVVLYAGKMTDSIKKAVSETERR 568
            +     YA  +T   ++  S+ E+R
Sbjct: 909 HHQ---AYAYLLTPPRQQITSDAEKR 931