Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 702 a.a., Excinuclease ABC subunit B from Variovorax sp. SCN45

 Score =  689 bits (1779), Expect = 0.0
 Identities = 349/660 (52%), Positives = 468/660 (70%), Gaps = 23/660 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F+L   + P G Q +AI GLV+ +     +  QTLLGVTGSGKT+T+ANVI ++ +P +V
Sbjct: 33  FELFQPYPPAGDQPKAIEGLVEGVIDG--EVFQTLLGVTGSGKTYTMANVIARLGRPAIV 90

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
            A NKTLAAQLY+EF+EFFP+N VEYFVSYYDYYQPE+Y+PQ+D +IEKD+ IN  IEQM
Sbjct: 91  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 150

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           RL AT ++L RRD +IVA+VS IYG+G PE + EM    +VG+K+ + D+I +L+ +QY 
Sbjct: 151 RLSATKSVLERRDTVIVATVSAIYGIGTPEDYMEMRLIARVGDKVGQRDLISRLIRMQYL 210

Query: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RN+ +   G FRV+GDT+D+ P    ++ +R E+F DEI+ +   DP     + ++  F 
Sbjct: 211 RNEQDFARGTFRVRGDTIDVFPAEHSELAIRFELFDDEIESLQLFDPLTGRIRQKVPRFT 270

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEETGS 300
           +YP+ H+V P +    A+ +I  EL   L  L     ++++ RL+Q+T +D+EM+ E G 
Sbjct: 271 VYPSSHYVTPRDKVMAAVETIKIELAGRLKELVGAGKLVEAQRLEQRTRFDLEMLAEIGH 330

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           CKGIENY+RH      G+P   L DY P+D L+ +DESHQ + Q+  MY GDR+RK +L+
Sbjct: 331 CKGIENYTRHLSGAAPGDPPATLTDYLPKDALMFLDESHQMVGQLSAMYNGDRARKTTLV 390

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPEV 420
           +YGFRLPSA DNRPLK EEF+  +   IFVSATP +YE D++  VVEQ++RPTGL+DPEV
Sbjct: 391 EYGFRLPSALDNRPLKMEEFEARVRQCIFVSATPAQYEKDHAGNVVEQLVRPTGLIDPEV 450

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
           E+RP  +QV+D++ E    VEK ERVLITTLTKR++E+LT+YL    VK RYLHSD+DT+
Sbjct: 451 EVRPATHQVDDVLGEIRVRVEKNERVLITTLTKRMSEQLTDYLGDNGVKVRYLHSDVDTV 510

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EI+R+LRLG FD LVGINLLREGLDIPEV  V ILDADKEGFLR ++SLIQTIGRAA
Sbjct: 511 ERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 570

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV------ 594
           RN N K +LYA +MTDS+KKA+ ETERRR  Q  HNE + ITP++IVK +R+ +      
Sbjct: 571 RNLNGKAILYADRMTDSMKKAIDETERRRARQIAHNEANGITPRSIVKQVRDLIDGVYSE 630

Query: 595 ----------VDISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLKKK 644
                     ++ + V+ +   DI   I  LE +M E A  LEFEKA ++RD +A L+++
Sbjct: 631 KTGKEMAKLDLERAKVEDMSEKDIAREIKRLEKQMLEHARNLEFEKAARVRDQLALLREQ 690