Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 13/202 (6%)

Query: 73  AAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSA 132
           A +L +E   F PE R   F  + +    +S+ P +D   E+ A +       R+    A
Sbjct: 50  AQRLIDEIAFFAPELRCALFPDW-ETLPYDSFSPHQDLISERLATL------WRISQKEA 102

Query: 133 ILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELV 192
                DV++V + + +Y L  P       F  K  +K++ S +  +L    Y      + 
Sbjct: 103 -----DVVLVPATTALYRLAPPAFLAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVS 157

Query: 193 PGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFV 252
           PG + V+G  +D+ P       RV++F DEID I   DP      + +    + P + F 
Sbjct: 158 PGEYAVRGGLIDLFPMGSPVPFRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFP 217

Query: 253 IPEEDKKNAINSILKELDEWLP 274
           + +ED +       +EL E  P
Sbjct: 218 M-DEDARGRFRGRWRELLEGDP 238



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 28/146 (19%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 425 IENQVEDIIKETE-KMVEKGERVL-----ITTLTKRLAEELTEYLAKRNVKARYLHSDID 478
           + N+   +I+E   + +++G +V      + T+  R  ++L E L +  +     H  + 
Sbjct: 798 VRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENR-RQKLEEILPEARIAVA--HGQMP 854

Query: 479 TIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGR 538
             E   ++R+    +++ L+   ++  G+D+P    + +  ADK G  +    L Q  GR
Sbjct: 855 ERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQ----LHQLRGR 910

Query: 539 AARNANSKVVLYAGKMTDSIKKAVSE 564
             R+ +          T+ + K  ++
Sbjct: 911 VGRSHHQAYAYLMVPDTEGLTKQAAQ 936