Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

 Score =  643 bits (1659), Expect = 0.0
 Identities = 337/655 (51%), Positives = 452/655 (69%), Gaps = 20/655 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F L ++++P G Q  AIA LV    K  EK  Q LLGVTGSGKTFT+A  IE +Q+P L+
Sbjct: 35  FTLVSDYEPSGDQPTAIAELVA-AAKQGEKD-QVLLGVTGSGKTFTMAKTIEALQRPALI 92

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NK LAAQLY EFK FFP+N VEYFVSYYDYYQPE+Y+ + D YIEK++ +N  I++M
Sbjct: 93  LAPNKILAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESSVNESIDRM 152

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           R  AT A+L R DVIIVASVSC+YG+G+ E +  M F +K G    + +II KLV +QY+
Sbjct: 153 RHSATRALLERDDVIIVASVSCLYGIGSVETYSAMTFSMKKGGIEDQREIIRKLVALQYK 212

Query: 186 RNDMELVPGRFRVKGDTLDIIPG-YQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RND     G FRVKGD L+I P  Y+D   R+  FGDEI+ I E DP +  K   +D   
Sbjct: 213 RNDAGFARGNFRVKGDNLEIFPSHYEDTAWRISFFGDEIEEIVEFDPLSGRKVASLDYVK 272

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300
           ++P  H V P    K A+ +I  EL E L  L+    +L++ RL+Q+T +D+EMI  TGS
Sbjct: 273 VFPNSHHVTPGPTLKQAMEAIRFELTERLKELEAEGKLLEAQRLEQRTNFDLEMIAATGS 332

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           C GIENYSR    R  GEP   L +Y PE+ ++ +DESHQT+PQI  M +GD  RK +L 
Sbjct: 333 CAGIENYSRFLTGRLPGEPPPTLFEYLPENAVLFVDESHQTVPQIGAMARGDHRRKITLA 392

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVV-EQIIRPTGLLDPE 419
           +YGFRLPS  DNRPL+F E+       + VSATPG +E++ +  V  EQ+IRPTGL+DP 
Sbjct: 393 EYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATPGPWEMEQTGGVFSEQVIRPTGLIDPP 452

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           VEI+P+E+QV+D+I E  K+  +G R L+TTLTKR+AE+LTE++ +  +K RY+HSD++T
Sbjct: 453 VEIKPVEDQVDDLINECRKVAAQGYRTLVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVET 512

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           +ER E+IR+LRLG +D L+GINLLREGLDIPE G V ILDADKEGFLR++ SLIQTIGRA
Sbjct: 513 LERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRA 572

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDIS- 598
           ARN + +V+LYA ++T S+++A++ET RRR+ Q+ +N+ H ITP T+ K I + +  ++ 
Sbjct: 573 ARNVDGRVILYADRVTGSMERALNETSRRREKQQAYNDAHGITPFTVKKNIGDIIAHVAS 632

Query: 599 -----------DVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLK 642
                      D  H+   ++   I +LE +M  AA  LEFE+A +IRD I KL+
Sbjct: 633 KDQVTVETGLEDRPHLVGHNLRAYIEDLEKKMRAAAADLEFEEAGRIRDEIRKLE 687