Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

 Score = 56.2 bits (134), Expect = 8e-12
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 22/225 (9%)

Query: 154 PELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI 213
           P   +++   L   E+I  + + + L    Y R D     G F ++G  +D+ PG ++  
Sbjct: 124 PFRVRQLVARLAPKERIAITRLADMLQSNGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQP 183

Query: 214 LRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWL 273
           LR++ FGDEI+ +   DP +      +D F + PA   ++ +ED         +E     
Sbjct: 184 LRLDFFGDEIETVRRFDPTDQRTTGSVDGFTLLPASEALL-DEDTIKRFRGRYRETFGAT 242

Query: 274 PNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLI 333
              D L             + + E     G+E++   FE     E    L D+  +D +I
Sbjct: 243 ATGDPL------------YQAVSEGRRLAGMEHWLPLFE-----EKLVPLTDHLGDDAII 285

Query: 334 VIDESHQTIPQIRGMYKGDRSRKQSLIDYGFRLPSAYDNRPLKFE 378
           V D  H  +      ++  R    + I      P AY  RPLK E
Sbjct: 286 VRD--HGVVGAADARFEAIRDYHANRIAAKSADPGAY--RPLKPE 326



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 458 ELTEYLAKR--NVKARYLHSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFV 515
           E+ E+L      VK    H  +   +  E +      ++D L+   ++  GLDIP    +
Sbjct: 835 EVEEFLRTEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTL 894

Query: 516 GILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYAGKMTDSIKKAVSETERRR 569
            I  AD+ G  +    L Q  GR  R   SK   YA   T    + ++ET  +R
Sbjct: 895 IIHRADRFGLAQ----LYQLRGRVGR---SKTRAYA-YFTTPANRIITETAEKR 940