Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 22/226 (9%)

Query: 37  KQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY- 95
           KQT   + G+  +  IA       + TL++  +   A +L  E + F P+  V  F  + 
Sbjct: 15  KQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWE 74

Query: 96  ---YDYYQPESYIPQKDQYIEKDAQINPKIEQM-RLRATSAILSRRDVIIVASVSCIYGL 151
              YD + P   I            I+ +I  + RL   S       +++V   + ++ L
Sbjct: 75  TLPYDLFSPHQDI------------ISQRIASLYRLPELS-----HGILVVPITTALHRL 117

Query: 152 GNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQD 211
                       L VG+ I    +  +L    Y   D     G F V+G  +D+ P    
Sbjct: 118 APTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSK 177

Query: 212 DILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEED 257
              R+++F +EI+ +   DP+      ++DS  + PA+ F + +E+
Sbjct: 178 LPYRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEE 223



 Score = 39.7 bits (91), Expect = 8e-07
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 38/146 (26%)

Query: 449 TTLTKRLAEELTEYLAKRNVKARYLHSDIDTIER-----TEIIRNLRLG----------- 492
           +T+ + L  EL      R  +  YLH+D+ TIE+      E++   R+G           
Sbjct: 798 STVKEALLRELL-----RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMREREL 852

Query: 493 ----------KFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARN 542
                     +F+ LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+
Sbjct: 853 EQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRS 908

Query: 543 ANSKVVLYAGKMTDSIKKAVSETERR 568
            +     YA  +T + +K  ++ E+R
Sbjct: 909 HHQ---AYAYLLTPTRQKVSADAEKR 931