Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 671 a.a., excinuclease UvrABC protein B from Pseudomonas putida KT2440

 Score =  683 bits (1762), Expect = 0.0
 Identities = 353/672 (52%), Positives = 465/672 (69%), Gaps = 37/672 (5%)

Query: 5   DFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTL 64
           +F+L   F+P G Q EAI  LV+ +E     S QTLLGVTGSGKTF+IANVI++VQ+PTL
Sbjct: 3   EFQLVTRFQPAGDQPEAIRQLVEGIEAG--LSHQTLLGVTGSGKTFSIANVIQQVQRPTL 60

Query: 65  VIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQ 124
           V+A NKTLAAQLY EFK FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA IN  IEQ
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 125 MRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQY 184
           MRL AT A+L RRD IIV +VSCIYGLG+PE + +M   +  G+K+ +  ++ +L D+QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 185 ERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHEIDSF 243
            RN+M+     FRV+GD +DI P   D + +R+E+F DE++ I   DP       ++  F
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 244 YMYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETG 299
             YP  H+V P E    A+  I +EL E L  L     ++++ RL+Q+T +D+EMI E G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 300 SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSL 359
            C GIENYSR+   R  G P   L DY P D L+VIDESH ++PQ+  MYKGDRSRK++L
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 360 IDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPE 419
           ++YGFR+PSA DNRP++F+E++      IFVSATPG YE +++ +VVEQ++RPTGL+DP+
Sbjct: 361 VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ 420

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           VE+RP   QV+D++ E  K V  GERVL TTLTKR+AE+L++YLA  +V+ RYLHSDIDT
Sbjct: 421 VEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDT 480

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           +ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQTIGRA
Sbjct: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD 599
           ARN N + +LYA  +T S+++A+ ETERRR+ Q   NE + I P+ +VK I     DI +
Sbjct: 541 ARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDI----TDIME 596

Query: 600 VKHIPVA--------------------------DIPNVIVELEAEMYEAAEALEFEKAIK 633
              +P A                          +I   I +LE +M + A  LEFE A +
Sbjct: 597 GATVPGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656

Query: 634 IRDTIAKLKKKI 645
           +RD IA+L++++
Sbjct: 657 LRDEIAQLRERL 668