Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1135 a.a., Transcription-repair-coupling factor from Methylophilus sp. DMC18

 Score = 48.9 bits (115), Expect = 1e-09
 Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 33/288 (11%)

Query: 135 SRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPG 194
           ++ +V+IV   + +  L          F LK G+++    +  +     Y      + PG
Sbjct: 100 NQSNVVIVPMATALLRLPPVAYLAAHSFMLKKGQRLDVEALRNQCAQAGYHHVSQVMAPG 159

Query: 195 RFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIP 254
            F V+G  +D+ P       R+++F DEI+ I   D       + +    M PA+ F + 
Sbjct: 160 EFSVRGGLVDLFPMGSAFPYRIDLFDDEIETIRTFDIDTQRSVYPVPEIRMLPAREFPMD 219

Query: 255 EEDKKNAINSILKELDEWLPNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENR 314
           E     AI     +  E+       +    + K   D+     +G   G+E Y   F   
Sbjct: 220 EA----AITRFRSQFREY------FEGDPQRAKIYKDVSKGTPSG---GVEWYLPLF--- 263

Query: 315 KEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLIDYGFRLPSAYDNRP 374
              E    L DY P   ++ +   H  + +    +  D S +  L+ +    P       
Sbjct: 264 --FEQTATLFDYLPAQTVLCL---HGDLDKAAQTFWADASTRYRLMAHDAEKPILRPETL 318

Query: 375 L-KFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPEVE 421
           L K +EF K  ++   V           + Q+ +Q + P   +D   E
Sbjct: 319 LQKADEFFKRTHDFALV-----------TQQIAQQTVLPPVDVDRRAE 355