Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 702 a.a., excinuclease ABC subunit UvrB from Magnetospirillum magneticum AMB-1

 Score =  659 bits (1701), Expect = 0.0
 Identities = 337/656 (51%), Positives = 458/656 (69%), Gaps = 20/656 (3%)

Query: 5   DFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTL 64
           +FK+ ++++P G Q +AIA L   ++   ++  Q LLGVTGSGKTFT+A+VI + ++P L
Sbjct: 21  EFKIVSDYQPAGDQPQAIAELSAGVDA--DERDQVLLGVTGSGKTFTMAHVIARTRRPAL 78

Query: 65  VIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQ 124
           V+A NKTLAAQLY E K FFP+N VEYFVSYYDYYQPE+YIP+ D YIEKD+ +N +I++
Sbjct: 79  VLAPNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDR 138

Query: 125 MRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQY 184
           MR  AT A+L RRDVI+VASVSCIYG+G+ E +  M   LKVGE I RSD++++LV++QY
Sbjct: 139 MRHAATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQY 198

Query: 185 ERNDMELVPGRFRVKGDTLDIIP-GYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSF 243
            RND     G FRV+GD ++I P  Y+D   R+ +FGDEI+ I E DP    K   +   
Sbjct: 199 TRNDAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEV 258

Query: 244 YMYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETG 299
            +YP+ H+V P      AI  I  EL E L        +L++ RL+Q+T +D+EM+E TG
Sbjct: 259 TVYPSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTG 318

Query: 300 SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSL 359
            CK IENYSR+   R+ G+P   L +Y PED L+++DESH T+PQI GMY+GD +RK  L
Sbjct: 319 HCKSIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVL 378

Query: 360 IDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDP 418
            ++GFRLPS  DNRPLKFEE++      ++VSATPG +E++ +  V  EQ+IRPTGL+DP
Sbjct: 379 AEFGFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDP 438

Query: 419 EVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDID 478
              +RP+E+QV+D++ E  +M   G R L+TTLTKR+AE+LTEY+    V+ RYLHSDID
Sbjct: 439 VCIVRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDID 498

Query: 479 TIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGR 538
           T+ER EIIR+LRLG FD L+GINLLREGLDIPE   V ILDADKEGFLR+  SLIQTIGR
Sbjct: 499 TLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGR 558

Query: 539 AARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDIS 598
           AARN + +V+LYA KMT S+  A++ET RRR+ Q+ +N  H ITP+ I K + + +  + 
Sbjct: 559 AARNIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVY 618

Query: 599 DVKHIPVA------------DIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLK 642
           +  ++ V             ++ +V  ++E  M  AA  LEFE+A ++RD + +L+
Sbjct: 619 EADYVTVGTGDSGLAHGVGHNLASVKADIEKRMKAAAADLEFEEAARLRDELRRLE 674