Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 673 a.a., excinuclease ABC subunit B (NCBI) from Escherichia coli BW25113

 Score =  692 bits (1786), Expect = 0.0
 Identities = 372/674 (55%), Positives = 467/674 (69%), Gaps = 38/674 (5%)

Query: 1   MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQ 60
           MS P FKL + FKP G Q EAI  L + LE     + QTLLGVTGSGKTFTIANVI  +Q
Sbjct: 1   MSKP-FKLNSAFKPSGDQPEAIRRLEEGLEDG--LAHQTLLGVTGSGKTFTIANVIADLQ 57

Query: 61  KPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINP 120
           +PT+V+A NKTLAAQLY E KEFFPEN VEYFVSYYDYYQPE+Y+P  D +IEKDA +N 
Sbjct: 58  RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE 117

Query: 121 KIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
            IEQMRL AT A+L RRDV++VASVS IYGLG+P+L+ +M   L VG  I +  I+ +L 
Sbjct: 118 HIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLA 177

Query: 181 DIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHE 239
           ++QY RND     G FRV+G+ +DI P   DDI LRVE+F +E++R+   DP        
Sbjct: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237

Query: 240 IDSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMI 295
           I  F +YP  H+V P E    A+  I +EL       L N  +L+  RL Q+T +D+EM+
Sbjct: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSR 355
            E G C GIENYSR    R  GEP   L DY P D L+V+DESH TIPQI GMY+GDR+R
Sbjct: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357

Query: 356 KQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTG 414
           K++L++YGFRLPSA DNRPLKFEEF+      I+VSATPG YEL+ S   VV+Q++RPTG
Sbjct: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417

Query: 415 LLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLH 474
           LLDP +E+RP+  QV+D++ E  +     ERVL+TTLTKR+AE+LTEYL +   + RYLH
Sbjct: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477

Query: 475 SDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQ 534
           SDIDT+ER EIIR+LRLG+FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQ
Sbjct: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537

Query: 535 TIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV 594
           TIGRAARN N K +LY  K+T S+ KA+ ETERRR+ Q+++NE+H ITPQ + K    KV
Sbjct: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK----KV 593

Query: 595 VDISDV-------------KHIPVADIPNV------------IVELEAEMYEAAEALEFE 629
           VDI  +             K  P+ +  NV            I ELE  M + A+ LEFE
Sbjct: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653

Query: 630 KAIKIRDTIAKLKK 643
           +A +IRD + +L++
Sbjct: 654 EAAQIRDQLHQLRE 667