Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 670 a.a., excinuclease ABC subunit B from Dickeya dianthicola ME23

 Score =  674 bits (1740), Expect = 0.0
 Identities = 349/663 (52%), Positives = 459/663 (69%), Gaps = 26/663 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           FKL ++FKP G Q EAI  L   LE     + QTLLGVTGSGKTFT+ANVI  + +PT+V
Sbjct: 5   FKLHSDFKPAGDQPEAIRRLEDGLEDG--LAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NKTLAAQLY E K FFPEN VEYFVSYYDYYQPE+Y+P  D +IEKDA +N  IEQM
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           RL AT A+L RRDV++VASVS IYGLG+P+L+ +M   L  G  I +  I+ +L ++QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYA 182

Query: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RND     G FRV+G+ +DI P   +DI LRVE+F +E++R+   DP        +  + 
Sbjct: 183 RNDQAFARGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYT 242

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMIEETGS 300
           +YP  H+V P E    A+  I  EL +     L    +L+  RL Q+T +D+EM+ E G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKVELADRRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGY 302

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           C GIENYSR    R  GEP   L DY P D L+VIDESH TIPQ+ GMY+GDR+RK++L+
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLV 362

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTGLLDPE 419
           +YGFRLPSA DNRP+KFEEF+      I+VSATPG YEL+ S  +V++Q++RPTGLLDP+
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPQ 422

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           +E+RP+  QV+D++ E  K     ERVL+TTLTKR+AE+LTEYL +   + RYLHSDIDT
Sbjct: 423 LEVRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           +ER EIIR+LRLG+FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPI--------- 590
           ARN N K +LYA ++T S+++A++ET+RRR+ Q+ +NE+H I PQ + K I         
Sbjct: 543 ARNLNGKAILYADRITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDLLQIGQS 602

Query: 591 ---------REKVVDISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKL 641
                    ++     +  + +    +   I ELE++M   A+ LEFE+A ++RD I  L
Sbjct: 603 ANGRGKGRGKKAAEPAAQYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRDEIHAL 662

Query: 642 KKK 644
           +++
Sbjct: 663 REQ 665