Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1150 a.a., transcription-repair coupling factor from Dickeya dianthicola 67-19

 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 63/300 (21%), Positives = 115/300 (38%), Gaps = 33/300 (11%)

Query: 37  KQTLLG-VTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY 95
           +Q LLG +TG+      A ++E+     ++I  +   A +L +E ++F            
Sbjct: 16  EQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTA---------- 65

Query: 96  YDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPE 155
               QP   +P  +         + +I   RL     + S    +++  V+ +     P 
Sbjct: 66  ----QPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH 121

Query: 156 LFKE-MGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDIL 214
            F       LK G+++ R  +  +L    Y   D  +  G F  +G  LD+ P   ++  
Sbjct: 122 AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 181

Query: 215 RVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLP 274
           R++ F DEID +   D       +E+D  ++ PA+ F       K AI     +  E   
Sbjct: 182 RIDFFDDEIDSLRLFDADTQRTLNEVDQIHLLPAREF----PTDKTAIELFRSQWRE--- 234

Query: 275 NLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIV 334
                    +++   +  + + +     GIE +   F N    +P   L  Y P   L+V
Sbjct: 235 ------QFEVRRDAEHIYQQVSKGTLPAGIEYWQSLFFN----QPLPALFSYLPTGTLLV 284



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 453 KRLAEELTEYLAKRNVKARYLHSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEV 512
           ++ A++L E + +  +     H  +   +   ++ +    +F+ LV   ++  G+DIP  
Sbjct: 824 EKAAQQLNELVPEARIAIG--HGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSA 881

Query: 513 GFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYAGKMTDSIKKAVSETERR 568
             + I  AD  G  +    L Q  GR  R+ +     YA  +T + K   ++  +R
Sbjct: 882 NTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPNPKAMSNDAHKR 930