Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 76.6 bits (187), Expect = 6e-18
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 23/267 (8%)

Query: 42  GVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDY-YQ 100
           G++GS     +A  I       L+IAH+K  AA L ++            F S Y   YQ
Sbjct: 35  GISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKRPYQ 94

Query: 101 PESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSR--RDVIIVASVSCIYG-LGNPELF 157
            E              +++     MR    + +LS   +  IIV+    +Y  + N +  
Sbjct: 95  HE--------------EVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINKKSL 140

Query: 158 KEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVE 217
           +E  F  KVGEK+    I E L    +E+ D    PG+F ++G  +D+     +   R+E
Sbjct: 141 QENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIE 200

Query: 218 MFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPN-- 275
           +FG EI+ I   D ++   +  +D   + P     + +E +++  + + K+   W+ +  
Sbjct: 201 LFGKEIESIRTFDTESQLSEESLDHISIIPNVQTKLMQEVRQSFTDFLPKDTCVWIKDVQ 260

Query: 276 --LDMLKSHRLKQKTLYDIEMIEETGS 300
             +DML +   K +  +D +++++TGS
Sbjct: 261 FTMDMLDNAFEKARQQFD-KIVDQTGS 286



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 474 HSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLI 533
           H  +D  +  +I+     G+FD LV  N++  GLDIP    + I  A   G       L 
Sbjct: 802 HGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGL----SDLH 857

Query: 534 QTIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREK 593
           Q  GR  R +N K   Y   +T  +    +E  +R +  +E ++  +         +  +
Sbjct: 858 QMRGRVGR-SNKKAYCYL--LTSPMSGLTAEARKRLQTLEEFSDLGD------GFKVAMR 908

Query: 594 VVDISDVKHIPVADIPNVIVELEAEMY-----EAAEALEFEKAIKIRDTIAKLKKKI 645
            +DI    ++  A+    I +L  EMY     EA + L+  +   + +   K K K+
Sbjct: 909 DLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKENEFASLFEVDLKEKVKV 965