Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 678 a.a., excinuclease ABC, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  671 bits (1732), Expect = 0.0
 Identities = 337/674 (50%), Positives = 484/674 (71%), Gaps = 35/674 (5%)

Query: 5   DFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTL 64
           DFK+ +++ P G Q  AI  L + +     +  Q LLGVTGSGKTFT+ANVI++VQ+PTL
Sbjct: 2   DFKIISDYSPTGDQPNAIKNLSEGISSG--EPSQVLLGVTGSGKTFTVANVIQEVQRPTL 59

Query: 65  VIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQ 124
           V+ HNKTLAAQLY EFK+FFP+N VEYF+SYYDYYQPE++IP    YIEKD  IN +IE+
Sbjct: 60  VLCHNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFIPTSGVYIEKDLSINEEIEK 119

Query: 125 MRLRATSAILS-RRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQ 183
           +RL ATSA+LS RRDVI+VASVSCIYG+GNPE F +    L+ G++I R+ ++ +LVDI 
Sbjct: 120 LRLSATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNVVNLEEGQRIPRNQLLFQLVDIL 179

Query: 184 YERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSF 243
           Y R ++E   G FRVKGDT+DI   Y D   R+  +GDEI+ I  +DP+   +       
Sbjct: 180 YSRANVEFKHGTFRVKGDTVDIFVAYADFAYRIYFWGDEIEGIQRIDPETGKRISSEKQI 239

Query: 244 YMYPAKHFVIPEEDKKNAINSI----LKELDEWLPNLDMLKSHRLKQKTLYDIEMIEETG 299
            ++PA  FV  +E    AI  I    + ++  +  ++ + ++ RL+++T +D+EMI E G
Sbjct: 240 TIFPANLFVTGKETIDVAIKEIQDDLMSQISFFEKDMRLEEASRLRERTEFDLEMIRELG 299

Query: 300 SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSL 359
            C G+ENYSR+F+ R  G   +CLLDYFP+D+++VIDESH T+PQIR M+ GDRSRK +L
Sbjct: 300 YCSGVENYSRYFDRRSAGARPFCLLDYFPDDYMLVIDESHVTVPQIRAMWGGDRSRKVNL 359

Query: 360 IDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVV-EQIIRPTGLLDP 418
           ++YGFRLPSA DNRPLKF+EF+   N VI+VSATP +YEL+ ++ VV EQIIRPTGLLDP
Sbjct: 360 VEYGFRLPSALDNRPLKFDEFESLTNQVIYVSATPADYELNQTDGVVVEQIIRPTGLLDP 419

Query: 419 EVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDID 478
            +E+RP  +Q++D+++E ++ ++KG+RVL+TTLTKR+AEEL ++L +  +K+RY+HS++ 
Sbjct: 420 LIEVRPSGDQIDDLLEEIDQTIKKGDRVLVTTLTKRMAEELNKFLERAGIKSRYIHSEVK 479

Query: 479 TIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGR 538
           +++R EI+R LRLG FD LVG+NLLREGLD+PEV  V ILDADKEGFLRN++SL+QTIGR
Sbjct: 480 SLDRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGR 539

Query: 539 AARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVV--- 595
           AARN N +V++YA ++T S+++A+ ET+RRR +Q  +NE+H ITP+T++K  ++K++   
Sbjct: 540 AARNENGRVIMYADRVTASMQRAIDETKRRRSIQMAYNEEHGITPKTVIKS-KDKIMGQT 598

Query: 596 DISD-----------------------VKHIPVADIPNVIVELEAEMYEAAEALEFEKAI 632
            ++D                       V+++    +  +I + + +M +AA+ L F +A 
Sbjct: 599 KVADSKKNAKFYDDHFTEENAYAADPVVQYLSKEKLEKLIPQTQKQMEKAAKELNFMEAA 658

Query: 633 KIRDTIAKLKKKIK 646
           ++RD     KK+++
Sbjct: 659 RLRDEWQGQKKRLE 672