Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  652 bits (1682), Expect = 0.0
 Identities = 341/661 (51%), Positives = 456/661 (68%), Gaps = 28/661 (4%)

Query: 7   KLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVI 66
           ++ +E++P G Q  AIA LV+ +  N  +  Q LLGVTGSGKTFT+A VIE  Q+P +++
Sbjct: 172 RMDSEYQPAGDQPTAIADLVEGI--NSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVIL 229

Query: 67  AHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMR 126
           A NKTLAAQLY+EFK FFP+N VEYFVSYYDYYQPE+Y+P+ D +IEK++ IN +I++MR
Sbjct: 230 APNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMR 289

Query: 127 LRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYER 186
             AT ++L R D IIVASVSCIYG+G+ E +  M F+++VG+++ +  ++  LV  QY+R
Sbjct: 290 HSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKR 349

Query: 187 NDMELVPGRFRVKGDTLDIIPGYQDDIL-RVEMFGDEIDRIYELDPKNMSKKHEIDSFYM 245
            DM+   G FRV+GDT++I P + +D   R+ MFGDEID I E DP    K  ++ S  +
Sbjct: 350 RDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKI 409

Query: 246 YPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGSC 301
           Y   H+V P      AI SI +EL   L  L+    +L++ RL+Q+T YDIEM+E TGSC
Sbjct: 410 YANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSC 469

Query: 302 KGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLID 361
            GIENYSR+   R  GEP   L +Y P++ L+ IDESH ++ QI GMY+GD  RK +L +
Sbjct: 470 AGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAE 529

Query: 362 YGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPEV 420
           YGFRLPS  DNRPL+FEE+       + VSATPG +E++ S  V  EQ+IRPTGL+DP V
Sbjct: 530 YGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPV 589

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
           E+R   +QV+D++ E  +   KG R L T LTKR+AE+LTEYL ++ V+ RY+HSDIDT+
Sbjct: 590 EVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTL 649

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EIIR+LRLG FD LVGINLLREGLDIPE GFV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 650 ERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAA 709

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDV 600
           RN + KV+LYA  +T S+K+A+ ET RRR+ Q  +N +H ITP+++   I + +  + + 
Sbjct: 710 RNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYER 769

Query: 601 KHIPVADIPNV-------------------IVELEAEMYEAAEALEFEKAIKIRDTIAKL 641
            H+  ADI  V                   +  LE  M +AA  L+FEKA ++RD I +L
Sbjct: 770 DHVR-ADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRL 828

Query: 642 K 642
           K
Sbjct: 829 K 829