Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 673 a.a., UvrABC system protein B from Acinetobacter radioresistens SK82

 Score =  678 bits (1749), Expect = 0.0
 Identities = 346/671 (51%), Positives = 474/671 (70%), Gaps = 31/671 (4%)

Query: 3   SPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKP 62
           S  F+L  ++ P G Q +AI  LVK +++  +   Q LLGVTGSGKT+T+ANVI + Q+P
Sbjct: 4   SRPFELVTQYAPAGDQPQAIEKLVKGIQQGYKS--QLLLGVTGSGKTYTMANVIAQTQRP 61

Query: 63  TLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKI 122
           T+V+AHNKTLAAQLY EFK FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA IN  I
Sbjct: 62  TIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHI 121

Query: 123 EQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDI 182
           +QMRL AT ++L RRD IIVASVS IYGLG+PE + +M   +  G+++ R DII +LV++
Sbjct: 122 DQMRLSATRSLLERRDAIIVASVSAIYGLGDPEAYMKMLLHIVQGDRVGRDDIIRRLVEM 181

Query: 183 QYERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHEID 241
           QY RN++E V G +R++G+ +DI P   + + +R+E+F DE+D I   DP       ++ 
Sbjct: 182 QYTRNELEFVRGTYRIRGEIMDIFPAESEQNAIRIELFDDEVDSIRWFDPLTGKMLRKVP 241

Query: 242 SFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEE 297
              +YP  H+V P+++   AI++I  EL + L        +L++ R++Q+T YD+EM+++
Sbjct: 242 RVTIYPKSHYVTPKDNLVRAIDTIRDELKDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQ 301

Query: 298 TGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQ 357
            G   GIENYSRH   R+ G+    L DY P+D L++IDESH T+PQI  MYKGDRSRK+
Sbjct: 302 LGYTNGIENYSRHLSGRRPGDAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKE 361

Query: 358 SLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLD 417
           +L++YGFRLPSA DNRP+KFEE+++ +   +FVSATP  YEL+ S QVVEQ++RPTGL+D
Sbjct: 362 NLVNYGFRLPSALDNRPMKFEEWERIIPTTVFVSATPARYELEKSEQVVEQVVRPTGLID 421

Query: 418 PEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDI 477
           PE+EIRP+  QV+D++ E        ERVL+TTLTKR+AE+LT YL +  VK  YLHSDI
Sbjct: 422 PEIEIRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTAYLKEYGVKVAYLHSDI 481

Query: 478 DTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIG 537
           DT+ER +II  LR G FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQTIG
Sbjct: 482 DTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541

Query: 538 RAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV--- 594
           RAARN   K +LYA ++TDS++KA+ ETERRR  Q E NE H I P++ V+ + +++   
Sbjct: 542 RAARNIKGKAILYADRITDSMQKAIDETERRRNKQIEFNELHGIIPRSAVRQVIKEIDTG 601

Query: 595 -------VD----------ISDVKHIPVAD---IPNVIVELEAEMYEAAEALEFEKAIKI 634
                  +D           +D +HI +AD   +   + +LE EM +A++ L+FE+A ++
Sbjct: 602 EVLAEDEIDEKITAQALSLTADERHI-LADPKLLSKHMAKLEKEMLKASKELQFEQAARL 660

Query: 635 RDTIAKLKKKI 645
           RD I +LK ++
Sbjct: 661 RDEILRLKAQM 671