Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 63.2 bits (152), Expect = 7e-14
 Identities = 71/325 (21%), Positives = 138/325 (42%), Gaps = 29/325 (8%)

Query: 12  FKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKT 71
           F+PK   +        +L++     K+ +  + GS     +  + E+ ++  +++A N  
Sbjct: 8   FRPKSIYMFQKEISQLNLKQLKAGEKRWVGSLLGSSAALLLKEIAEQSRQLLVLVAKNNQ 67

Query: 72  LAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATS 131
             AQL +E  EF+    + +    ++    +   P +D   E+ A ++   +Q  L  ++
Sbjct: 68  HVAQLESEL-EFYGIKPIIF--PDWEILPYDRLSPHQDIVSERLAILSNMPQQGILLLSA 124

Query: 132 AILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMEL 191
           + L++R    VA  S I G           F+++VG+K        +LV   Y   D   
Sbjct: 125 STLAQR----VAPTSWILG---------EHFDIRVGQKFDLEQQKLRLVQAGYLLVDTVY 171

Query: 192 VPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHF 251
             G F V+G  +DI    Q+  +R+++F DEID +   DP+       +  F + PAK F
Sbjct: 172 DHGEFAVRGSIMDIYASGQEAPIRIDLFDDEIDSLKFFDPETQRTTSNLTQFKVLPAKEF 231

Query: 252 VIPEEDKKNAINSILKELDEWLPNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHF 311
             P +D ++       E            +   K+  +Y  + + E  +  GI+ Y   F
Sbjct: 232 --PLKDGRSTFRDRYAE---------SFPTANPKKNPIY--QDVMEGIASPGIDFYLPLF 278

Query: 312 ENRKEGEPAYCLLDYFPEDFLIVID 336
            +++  +    L  Y P+  +++ D
Sbjct: 279 FSKQSIQTQGMLSAYLPQHSIVITD 303



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 33/129 (25%)

Query: 466 RNVKARYLHSDIDTIERT--------------------------EIIRNLRLGKFDCLVG 499
           R  +  +LH+++D+IERT                          ++++     +++ LV 
Sbjct: 827 RGGQVYFLHNEVDSIERTAENIRALVPEARVAVAHGQMRERELEQVMQQFYHKQYNVLVC 886

Query: 500 INLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYAGKMTDSIK 559
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SIK
Sbjct: 887 STIIETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIK 939

Query: 560 KAVSETERR 568
               + E+R
Sbjct: 940 ALKGDAEKR 948