Pairwise Alignments

Query, 417 a.a., sodium:proton antiporter from Methanococcus maripaludis S2

Subject, 578 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 26/357 (7%)

Query: 13  LFIIGSFI-------AKLADRIGIPDIPLLLITGLLIGPVLGLISPIYAQTIFSF-VGTI 64
           LFI+GS +       +  + R+GIP + + L  G+L G V G+    +    F++ V  +
Sbjct: 9   LFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAG-VDGVGGIPFDNYPFAYMVSNL 67

Query: 65  GLIILLLVGAFEMRWIVLKRVLKTVLKLDTIGLVISLLISGIIFSFIYALPFTNPIGFIY 124
            L I+LL G    +    +  L   L L T+G++I+  ++G++ ++++ L      G + 
Sbjct: 68  ALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLIE--GLLI 125

Query: 125 GAVNCATDPATLIPIFSKSDVDPKIAVTLEAESVFNDPLGIVATTLTLSSLGLSKSVNP- 183
           GA+  +TD A +  +     ++ ++  TLE ES  NDP+ +  T   ++ +   +S    
Sbjct: 126 GAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHESNISW 185

Query: 184 --ILDFVMLAFGGLALGYVGGKIFEFVVSKDEFGEYIAPLGVGSAMALWFFGEDVAPHFL 241
             I+D +     G+ +G  GG +   ++++      + PL   S   L F    +     
Sbjct: 186 MFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIF---SLTTALE 242

Query: 242 GYGLSGYMAVAIMGLYIGNVVTKKPKNSKDMHKMAEFCTDLSSLTRILIFVFLGASISLP 301
           G   SG +AV + G  +GN      +  ++ + + +    L+ L +I +F+ LG  ++  
Sbjct: 243 G---SGILAVYLCGFLLGN------RPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPS 293

Query: 302 LLKSFGIYGLLCAIGTLFIARPIGVFIATAIPPVSSLKERIYFALEGPRGVVPAALA 358
            L    I  L+ +   +F ARP+ VF         +L+ER++ +  G RG VP  LA
Sbjct: 294 DLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILA 350