Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 458 a.a., Predicted exonuclease of the beta-lactamase fold involved in RNA processing from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  183 bits (464), Expect = 2e-50
 Identities = 128/442 (28%), Positives = 214/442 (48%), Gaps = 37/442 (8%)

Query: 180 VRTSFLGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVV 239
           +   FLG +  V  +     T + +IL+DCG+   ++ E    +++ P  ++ +IDAV++
Sbjct: 6   INIHFLGAAGTVTGSKYLVDTGDRKILIDCGLFQGLK-ELRLKNWEYPPVNVADIDAVLL 64

Query: 240 THAHLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKDYVDITEKE---------GKNV 290
           TH H+DH G++P L + G+ GP+Y T PT D+  ++  D   I E+E          K+ 
Sbjct: 65  THGHMDHTGYLPRLVKQGFKGPIYGTNPTLDIAKIILNDSAKIQEQEAERANKEGYSKHS 124

Query: 291 PYSSKDIKNCIKHTIPLDYGVTTD----IAPAIKLTMHNAGHILGSAIAHCHVGDGLYNV 346
           P       N ++ TIP   GV       I   +K      GHILG+      +    +  
Sbjct: 125 PAEPLYDLNDVEKTIPYFKGVPPSQWLPILKDVKARFQYNGHILGATYIELDIRGKRF-- 182

Query: 347 AYTGDIKFEASRLLEPAVCQFPRLETLIIESTYGGYDDVLPERDETEKEFLRVIAETIAR 406
            ++GDI      LL P + +    + L IESTYGG     P+  E   +  +++ +TI R
Sbjct: 183 VFSGDIGRTNDLLLFPPL-KPKEADVLFIESTYGG--RFHPDEVEALPQIEKLVNDTINR 239

Query: 407 KGKAIIPVFGIGRAQELMLVLEEGYNQG-IFNAPVYLDGMIWEATAIHTAYPEYLSKNMR 465
            G   +P F + RAQ +ML+      +  I    + +D  +             L    R
Sbjct: 240 GGSLFVPSFSVERAQLMMLIFWRLLKENKIPKVQMIMDSPMG---------ANVLELFHR 290

Query: 466 NRIFHEGDNPFLSEV---FKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFKNLA 522
            R +H  ++    E+   F  + +  +   +   ++P I++  SGML+GG  + Y +  A
Sbjct: 291 TRDWHRLEDNECDEMCSYFTVISSYRETMELRTDNKPKIVIAGSGMLTGGRMLNYLETQA 350

Query: 523 DDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRK 582
            +  N+++FVGYQ+EGT GRK+ +G KE+ + G     K V   + V  +EG S H+D  
Sbjct: 351 QNPNNTLLFVGYQAEGTRGRKLLEGEKELKVYG-----KWVPFKMQVAEIEGLSAHADHA 405

Query: 583 QLIKYLRKLKPIPDRILTVHGE 604
           +L+ ++  +K  P RI  +HGE
Sbjct: 406 ELMDWMDSIKNKPKRIFIIHGE 427