Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 466 a.a., Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  207 bits (526), Expect = 1e-57
 Identities = 137/472 (29%), Positives = 234/472 (49%), Gaps = 29/472 (6%)

Query: 180 VRTSFLGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVV 239
           +R  FLGG++ V  +    +  +++IL+DCG+   +++ +   ++D    S   ID V++
Sbjct: 3   IRVKFLGGAQTVTGSRYLLEIDKTKILIDCGLFQGIKELRK-RNWDPFPISAAAIDMVLL 61

Query: 240 THAHLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVP-------- 291
           THAH+DH G++P L + G+ GP+  T+PT DL+  L  D   + E+E +           
Sbjct: 62  THAHIDHSGYLPKLVKEGFKGPILLTEPTMDLVKTLLLDAGKLQEEEAEYAKRKGFSKHE 121

Query: 292 -----YSSKDIKNCIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHV--GDGLY 344
                Y+ +D +       P+ +     + P   LT +NAGHILG+AI    V       
Sbjct: 122 DPSPLYTMEDAEEVFDQLSPISFDQPISLTPKATLTAYNAGHILGAAILKIQVRGNHQTK 181

Query: 345 NVAYTGDIKFEASRLLEPAVCQFPRLETLIIESTYGGYDDVLPERDETEKEFLRVIAETI 404
            + ++GD+      LL P +   P+ + L IESTYG       E +  EK     I ET 
Sbjct: 182 TIVFSGDLGRYTDPLLNPPI-GLPKADILFIESTYGNRSH---ETNGPEKLLAGAINETY 237

Query: 405 ARKGKAIIPVFGIGRAQELMLVLEEGYNQGIF-NAPVYLDGMIWEATAIHTAYPEYLS-K 462
            + G A+IP F +GR Q ++  L +   +G+    P+Y+D  +  A  +   Y ++L+  
Sbjct: 238 QKGGVAVIPAFAVGRTQLVLYYLYKLQQKGMIPQIPIYVDSPM--AIDVTKLYKDHLAYH 295

Query: 463 NMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFKNLA 522
            +   +  +G NPF  +     ++     ++ +     II++ SGM +GG  + +  N  
Sbjct: 296 RLGPSLQEDGTNPFSHKNLHYYQSQEASMSLNNIRGDAIIISASGMATGGRILHHLYNRL 355

Query: 523 DDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRK 582
            +E +SI+FVGYQ++GT GRK+  G + + + G +  +KA     S+H ++G S H+D+ 
Sbjct: 356 PNENDSIIFVGYQAKGTRGRKLLDGEERVRMYGIDVPAKA-----SIHYIDGLSAHADQD 410

Query: 583 QLIKYLRKLKPIPDRILTVHGEVSKCIDLASTAYKLFKKETKAPMNLDSIRL 634
           +L+++   +   P     VHGE       A T  + F   T  P  L+S  L
Sbjct: 411 ELLRWADCIAEKPKLTFVVHGEQEVSAAFAHTLKETFGWNTIVPDYLESFEL 462