Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 543 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  157 bits (396), Expect = 1e-42
 Identities = 124/446 (27%), Positives = 209/446 (46%), Gaps = 41/446 (9%)

Query: 183 SFLGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHA 242
           +F G +  V  +C    TP   +L+DCG+    +  +   +   P F    I AV++THA
Sbjct: 11  TFHGAAGTVTGSCFRLSTPAGDVLIDCGMFQGTKTIRELNYRPFP-FDPAAIKAVLLTHA 69

Query: 243 HLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKD--YVDITEKEGKN----------- 289
           H+DH G +P L + G+ G +Y T  T DL+  +  D  Y+   E E  N           
Sbjct: 70  HIDHSGLLPKLTKLGFRGRIYATGGTVDLLEYMLPDSGYIQEGEVERLNRRNRQRGRPPV 129

Query: 290 -VPYSSKDIKNCIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDGLYN--- 345
              Y+  D    ++    ++Y   T+I P ++     AGHILGSA     V DGL N   
Sbjct: 130 QAIYTQDDAIRSLRRLRRVEYDRWTEILPGLRARFWQAGHILGSASIEVEVSDGLGNGAG 189

Query: 346 ----VAYTGDIKFEASRLLEPAVCQFPRLETLIIESTYGGYDDVLPERDETEKE-FLRV- 399
               + ++GD+          A     R + +++E+TYG  D    + DE  ++  LR  
Sbjct: 190 DPTRILFSGDLGPGGKSFHADAEAP-ERPDWMVLETTYG--DRERTDLDEAGRQAVLRAE 246

Query: 400 IAETIARKGKAIIPVFGIGRAQELMLVLEEGYNQGIFNA-PVYLDGMIWEATAIHTAYPE 458
           ++  +A  G  +IPVF + R QEL+  L+  ++ G   A  V+LD  +  A A+   +  
Sbjct: 247 VSTALAAGGVLLIPVFAVERTQELLYDLDCLFDSGQLPAVDVFLDSPL--ADAVTGVFRR 304

Query: 459 YLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYF 518
           +L+      +  +GD PF    F  V+   + + +       I++  SGM   G    + 
Sbjct: 305 HLAD-----LETDGD-PFTRANFHHVRGVPESQRLNSIAGGAIVMAASGMCDAGRIRHHL 358

Query: 519 KNLADDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGH 578
           KN     +++++ VGYQ+ GTLGR +Q+G   + + G+      + V   V +++ +SGH
Sbjct: 359 KNRLWRPQDTVLLVGYQAPGTLGRLLQEGTPRVRIHGEE-----IAVKAKVRSIDVYSGH 413

Query: 579 SDRKQLIKYLRKLKPIPDRILTVHGE 604
           +DR  L+ ++     +   +  VHGE
Sbjct: 414 ADRTALLDWVDARHGVGHGLFLVHGE 439