Pairwise Alignments

Query, 383 a.a., signal recognition particle-docking protein FtsY from Methanococcus maripaludis S2

Subject, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

 Score =  171 bits (434), Expect = 3e-47
 Identities = 103/284 (36%), Positives = 159/284 (55%), Gaps = 8/284 (2%)

Query: 78  VTKSIKKVLGKDVILTEDDIEDVLEEMEMELFEADVAFDVVEKIIESLKNQLVGLKISAK 137
           ++++++ V GK   LTED+I+D L E+ M L EADVA  VV+  + S+K + VG ++S  
Sbjct: 9   LSQTLRHVTGK-AKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVGTEVSRS 67

Query: 138 DDPEEITINALKKSIKGILSQEKIDVFNLIDEKKANGEPAVLLFVGINGTGKTTSISKLA 197
             P +  +  ++  ++ ++     D+ NL     +   PAV+L  G+ G GKTT+  KLA
Sbjct: 68  LTPGQAFVKIVQAELESLMGAANEDL-NL-----SAVPPAVVLMAGLQGAGKTTTAGKLA 121

Query: 198 YILKEKGYSAVMA-AGDTFRAGAIEQLEEHGKNTGIKVIKHQKGADSAAVIYDAISHAKA 256
             LKE+   +VM  + D +R  AI+QLE      G+             +   AI  AK 
Sbjct: 122 RFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAKL 181

Query: 257 KGLNVVLADTAGRQTTNINLMDEIKKVVRVTKPDLIIFVGDSLAGNDAISQAEEFNNTIN 316
           K ++VV+ DTAGR   +  +M EIK +     P   +FV D++ G DA + A+ F + + 
Sbjct: 182 KFIDVVIVDTAGRLHIDEEMMGEIKALHAAINPVETLFVVDAMTGQDAANTAKAFGDALP 241

Query: 317 INGAILTKTDADAKGGAALSIAYSIGKPILFMGVGQRYSDLQEF 360
           + G ILTK D DA+GGAALS+    GKPI F+G+G++   L+ F
Sbjct: 242 LTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPF 285