Pairwise Alignments

Query, 383 a.a., signal recognition particle-docking protein FtsY from Methanococcus maripaludis S2

Subject, 456 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  159 bits (402), Expect = 1e-43
 Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 8/287 (2%)

Query: 78  VTKSIKKVLGKDVILTEDDIEDVLEEMEMELFEADVAFDVVEKIIESLKNQLVGLKISAK 137
           +++ +K++ G+  I TE ++ D+L E+ M L EADVA  VV   I  +K++ +G ++   
Sbjct: 9   LSRIVKEMRGQARI-TEGNVTDMLREVRMALLEADVALPVVRDFIARVKDKALGQEVVGS 67

Query: 138 DDPEEITINALKKSIKGILSQEKIDVFNLIDEKKANGEPAVLLFVGINGTGKTTSISKLA 197
             P +  +  + + +   +     D+ NL     A   PAV+L  G+ G GKTT+ +KLA
Sbjct: 68  LTPGQALVGIVHRELAATMGDGVADI-NL-----AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 198 YILKEKGYSAVMA-AGDTFRAGAIEQLEEHGKNTGIKVIKHQKGADSAAVIYDAISHAKA 256
             L EK    V+  +GD +R  AIEQL+      G +            +   AI HA+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPVDIARAAIDHARK 181

Query: 257 KGLNVVLADTAGRQTTNINLMDEIKKVVRVTKPDLIIFVGDSLAGNDAISQAEEFNNTIN 316
              +V+L DTAGR   +  LM EI+++  V KP   +FV D++ G DAI+ A  F + + 
Sbjct: 182 HYFDVLLVDTAGRLAIDEALMREIQELHAVLKPVETLFVVDAMQGQDAINTARAFKDALP 241

Query: 317 INGAILTKTDADAKGGAALSIAYSIGKPILFMGVGQRYSDLQEFDVD 363
           + G +LTK D D++GGAALS+    G PI F GV ++   L+ FD D
Sbjct: 242 LTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDAD 288