Pairwise Alignments

Query, 383 a.a., signal recognition particle-docking protein FtsY from Methanococcus maripaludis S2

Subject, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) from Escherichia coli BL21

 Score =  180 bits (456), Expect = 8e-50
 Identities = 104/293 (35%), Positives = 164/293 (55%), Gaps = 8/293 (2%)

Query: 78  VTKSIKKVLGKDVILTEDDIEDVLEEMEMELFEADVAFDVVEKIIESLKNQLVGLKISAK 137
           ++++++ + G+   LTED+++D L E+ M L EADVA  VV + I  +K + VG +++  
Sbjct: 9   LSRTLRNISGRGR-LTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKS 67

Query: 138 DDPEEITINALKKSIKGILSQEKIDVFNLIDEKKANGEPAVLLFVGINGTGKTTSISKLA 197
             P +  +  ++  +   + +E     NL     A   PAV+L  G+ G GKTTS+ KL 
Sbjct: 68  LTPGQEFVKIVRNELVAAMGEEN-QTLNL-----AAQPPAVVLMAGLQGAGKTTSVGKLG 121

Query: 198 YILKEKGYSAVMA-AGDTFRAGAIEQLEEHGKNTGIKVIKHQKGADSAAVIYDAISHAKA 256
             L+EK    V+  + D +R  AI+QLE   +  G+       G     ++  A+  AK 
Sbjct: 122 KFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181

Query: 257 KGLNVVLADTAGRQTTNINLMDEIKKVVRVTKPDLIIFVGDSLAGNDAISQAEEFNNTIN 316
           K  +V+L DTAGR   +  +MDEIK+V     P   +FV D++ G DA + A+ FN  + 
Sbjct: 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP 241

Query: 317 INGAILTKTDADAKGGAALSIAYSIGKPILFMGVGQRYSDLQEFDVDWMIKKL 369
           + G +LTK D DA+GGAALSI +  GKPI F+GVG++   L+ F  D +  ++
Sbjct: 242 LTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294