Pairwise Alignments
Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 829 a.a., TPR domain protein, putative component of TonB system from Variovorax sp. SCN45
Score = 53.9 bits (128), Expect = 2e-11
Identities = 39/198 (19%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Query: 200 KGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNN 259
+GL + ++T A+ ++ + Q + DA++ G + Y+ + A++ +A+
Sbjct: 23 QGLTQHRMGRFTEALRIYENLLSQFPEHADALHLTGEALYRQGRPKLALNYVNRAI---A 79
Query: 260 SNPYCYFY--KADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQ 317
+P+ +++ +A +G +A + ++AI+ P + L Y ++ + +
Sbjct: 80 KSPHHFYFNTRATIFMHMGLLAEAQQDLRRAIKALPNYPEAYVNLSAVYRQQKKFRQARE 139
Query: 318 SYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLL 377
+ +A L P+ +W+N G + + E++ F ++L L+S A +G
Sbjct: 140 AAGEATRLAPQSPAAWNNAGAIDMEQDRLEEAVEQFRQALKLDSGYIAAHKNIGKIRAHQ 199
Query: 378 KNYEKALMCYDKAIEIDP 395
K++ AL ++A + DP
Sbjct: 200 KDWAGALTSLEQA-QTDP 216
Score = 52.0 bits (123), Expect = 7e-11
Identities = 68/333 (20%), Positives = 137/333 (41%), Gaps = 26/333 (7%)
Query: 81 FGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEID------NSVGKTWFYKGI 134
+ L+ PE+ AL GE Q AL Y N+ + N+ + + G+
Sbjct: 40 YENLLSQFPEHADALHLTGEALYRQGRPKLALNYVNRAIAKSPHHFYFNTRATIFMHMGL 99
Query: 135 CLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLK 194
L + + K+ +Y ++ +L Y Q ++ +A +A L
Sbjct: 100 ----LAEAQQDLRRAIKALPNYPEAYV---NLSAVYRQQKKFRQAREAAGEATRLAPQSP 152
Query: 195 YSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKA 254
+ N G ++++ AVE F +A+ D Y A N G K ++ A++ E+A
Sbjct: 153 AAWNNAGAIDMEQDRLEEAVEQFRQALKLDSGYIAAHKNIGKIRAHQKDWAGALTSLEQA 212
Query: 255 LDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKA-----IELDSKNPIFWSGLGLSYNYL 309
+ + + + +L G E+A+ ++A +E+ ++ + Y
Sbjct: 213 -QTDPPDFEAAYLLSRALIACGRNEEAIAPMQRAMRHSTVEVRARALSDPEAVAALYGVC 271
Query: 310 N-------EYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSN 362
++ S + Y+ A+E PE + +NLG ++ Y+ +I +K+L+L+
Sbjct: 272 AALEGAAMRFDESEELYKLALESMPEQEALLNNLGATNFRQGRYDAAIEVLKKALELHPR 331
Query: 363 NKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDP 395
A LG +Y++ E A+ +++ + DP
Sbjct: 332 QVLARCNLGVTYVMAGQSEAAIAEFEQCLRDDP 364
Score = 32.3 bits (72), Expect = 5e-05
Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 43/257 (16%)
Query: 82 GRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDN-------SVGKTWFYKGI 134
G L P++ A + G I + Q+ ++A+ + + L++D+ ++GK ++
Sbjct: 142 GEATRLAPQSPAAWNNAGAIDMEQDRLEEAVEQFRQALKLDSGYIAAHKNIGKIRAHQ-- 199
Query: 135 CLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKAL---TLDG 191
K S+E D+E +L L C G ++AI +A+ T++
Sbjct: 200 --KDWAGALTSLEQAQTDPPDFEAAYLLSRALIAC----GRNEEAIAPMQRAMRHSTVEV 253
Query: 192 NLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCF 251
+ + + + Y + A+ DE + +Y + S
Sbjct: 254 RARALSDPEAVAA----LYGVCAALEGAAMRFDES--EELYKLALE-----------SMP 296
Query: 252 EKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNE 311
E+ LNN + R G Y+ A+ KKA+EL + + LG++Y +
Sbjct: 297 EQEALLNNLGATNF--------RQGRYDAAIEVLKKALELHPRQVLARCNLGVTYVMAGQ 348
Query: 312 YNSSIQSYEKAVELNPE 328
++I +E+ + +P+
Sbjct: 349 SEAAIAEFEQCLRDDPD 365
Score = 32.0 bits (71), Expect = 7e-05
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 75 DMAEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGI 134
D +E + +E PE + L +LG + Q YD A+ K LE+ G+
Sbjct: 282 DESEELYKLALESMPEQEALLNNLGATNFRQGRYDAAIEVLKKALELHPRQVLARCNLGV 341
Query: 135 CLKMLGNYDESVEAFDKSTGD 155
M G + ++ F++ D
Sbjct: 342 TYVMAGQSEAAIAEFEQCLRD 362
Score = 28.5 bits (62), Expect = 8e-04
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 40 YETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLG 99
++ S + + ALE P+ L LG + D A + +EL P A +LG
Sbjct: 281 FDESEELYKLALESMPEQEALLNNLGATNFRQGRYDAAIEVLKKALELHPRQVLARCNLG 340
Query: 100 EIHLSQEEYDKALYYYNKLLEID 122
++ + + A+ + + L D
Sbjct: 341 VTYVMAGQSEAAIAEFEQCLRDD 363