Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 659 a.a., tetratricopeptide repeat protein from Magnetospirillum magneticum AMB-1

 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 3/222 (1%)

Query: 74  LDMAEIYFGRLIELEPENKCA---LKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWF 130
           +D AE  + R++   P++  A   L +LG I   +    +AL  + + L +   + + W 
Sbjct: 21  VDEAEALYHRVLRQAPQSPEAAKSLTNLGVIAHGRGRTGEALTLHGQALALAPQLAEAWC 80

Query: 131 YKGICLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLD 190
            +G  L  LG  +E+   F ++      L   W +LG    + G+  +A  C+ +A  L 
Sbjct: 81  NRGDLLSDLGRLEEAEGDFVRACDLSPALLPAWFNLGNVRLRRGDTAQAEPCYRRAAALA 140

Query: 191 GNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISC 250
            +L         C +   Q   A +  + A       +  + + G    ++ +   A + 
Sbjct: 141 PHLPLIHAQLARCLDAMGQAEGAADAMEAAWRLAPDDWRLLTDLGALQQQAGRLHAAQNS 200

Query: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELD 292
              A+ LN S+   ++   +     G   +AV  ++ A  +D
Sbjct: 201 LRAAISLNPSHAAAHYNLGNVFYGEGRAAEAVACWQAAWSMD 242



 Score = 42.4 bits (98), Expect = 4e-08
 Identities = 34/149 (22%), Positives = 66/149 (44%)

Query: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLN 310
           F +A DL+ +    +F   +   R G+  +A   Y++A  L    P+  + L    + + 
Sbjct: 99  FVRACDLSPALLPAWFNLGNVRLRRGDTAQAEPCYRRAAALAPHLPLIHAQLARCLDAMG 158

Query: 311 EYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGL 370
           +   +  + E A  L P+D    ++LG LQ +    + + +    ++ LN ++  A   L
Sbjct: 159 QAEGAADAMEAAWRLAPDDWRLLTDLGALQQQAGRLHAAQNSLRAAISLNPSHAAAHYNL 218

Query: 371 GNSYLLLKNYEKALMCYDKAIEIDPLYNE 399
           GN +       +A+ C+  A  +DP   E
Sbjct: 219 GNVFYGEGRAAEAVACWQAAWSMDPSLGE 247



 Score = 38.5 bits (88), Expect = 6e-07
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 260 SNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIF---WSGLGLSYNYLNEYNSSI 316
           S+P     +A++L+  G  ++A   Y + +    ++P      + LG+  +       ++
Sbjct: 3   SDPALLLQQAEALHNQGRVDEAEALYHRVLRQAPQSPEAAKSLTNLGVIAHGRGRTGEAL 62

Query: 317 QSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLL 376
             + +A+ L P+   +W N G L        E+   F ++ DL+     AW  LGN  L 
Sbjct: 63  TLHGQALALAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLSPALLPAWFNLGNVRLR 122

Query: 377 LKNYEKALMCYDKAIEIDP 395
             +  +A  CY +A  + P
Sbjct: 123 RGDTAQAEPCYRRAAALAP 141



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 1/213 (0%)

Query: 165 DLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQD 224
           +LG   +  G   +A+    +AL L   L  +   +G       +   A   F +A    
Sbjct: 47  NLGVIAHGRGRTGEALTLHGQALALAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLS 106

Query: 225 ECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLN 284
                A +N G    +    + A  C+ +A  L    P  +   A  L+ +G+ E A   
Sbjct: 107 PALLPAWFNLGNVRLRRGDTAQAEPCYRRAAALAPHLPLIHAQLARCLDAMGQAEGAADA 166

Query: 285 YKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNK 344
            + A  L   +    + LG         +++  S   A+ LNP    +  NLG + Y   
Sbjct: 167 MEAAWRLAPDDWRLLTDLGALQQQAGRLHAAQNSLRAAISLNPSHAAAHYNLGNVFYGEG 226

Query: 345 NYNESISYFEKSLDLN-SNNKYAWNGLGNSYLL 376
              E+++ ++ +  ++ S  + A N L   + L
Sbjct: 227 RAAEAVACWQAAWSMDPSLGEAASNALNGLHYL 259



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 41  ETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGE 100
           E +    + A  L PD+   L  LG    +   L  A+      I L P +  A  +LG 
Sbjct: 161 EGAADAMEAAWRLAPDDWRLLTDLGALQQQAGRLHAAQNSLRAAISLNPSHAAAHYNLGN 220

Query: 101 IHLSQEEYDKALYYYNKLLEIDNSVGK 127
           +   +    +A+  +     +D S+G+
Sbjct: 221 VFYGEGRAAEAVACWQAAWSMDPSLGE 247