Pairwise Alignments
Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 614 a.a., hypothetical protein from Agrobacterium fabrum C58
Score = 60.5 bits (145), Expect = 1e-13
Identities = 36/159 (22%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 241 SKKYSCAISCFEKALDLNNSNPY-----CYFYKADSLNRLGEYEKAVLNYKKAIELDSKN 295
+K Y ++KA+++ + P +F + + RL +++KA N+K+A+EL+ +
Sbjct: 404 AKDYKAMAENYDKAVEVIGAVPQKSDWSVFFQRGIAYERLKQWDKAEPNFKRALELNPEQ 463
Query: 296 PIFWSGLGLSYNYLNE---YNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISY 352
P + LG Y+++++ + ++ +AVEL P D +LG+ Y+ ++++S++
Sbjct: 464 PQVLNYLG--YSWVDKGINLDEGMKMISRAVELRPNDGYIVDSLGWAHYRLGDFDQSVTE 521
Query: 353 FEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAI 391
E++++L + + + LG++Y + +A+ +++A+
Sbjct: 522 LERAIELKAGDPTINDHLGDAYWRVGRKIEAVYQWNRAL 560
Score = 41.6 bits (96), Expect = 7e-08
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 38 KDYETSVKCFDKALELDPDNTCSLEYLGKYSMENR--NLDMAEIYFGRLIELEPENKCAL 95
K ++ + F +ALEL+P+ L YLG YS ++ NLD R +EL P + +
Sbjct: 444 KQWDKAEPNFKRALELNPEQPQVLNYLG-YSWVDKGINLDEGMKMISRAVELRPNDGYIV 502
Query: 96 KSLGEIHLSQEEYDKALYYYNKLLEI 121
SLG H ++D+++ + +E+
Sbjct: 503 DSLGWAHYRLGDFDQSVTELERAIEL 528
Score = 40.0 bits (92), Expect = 2e-07
Identities = 56/288 (19%), Positives = 111/288 (38%), Gaps = 47/288 (16%)
Query: 53 LDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKAL 112
LDP + +L LG + + + A ++ + + P ++ + LG + +++
Sbjct: 318 LDPKSPDTLILLGGLAEAMKQPERAITFYREVPKDSPMHRISELQLGLTLAQTGKVEESR 377
Query: 113 YYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKST---------GDYETLFLTW 163
+ LLE D +++ G L +Y E +DK+ D+ F
Sbjct: 378 KHLLSLLESDPKDIRSYLAYGSVLSDAKDYKAMAENYDKAVEVIGAVPQKSDWSVFF--- 434
Query: 164 NDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQ 223
G Y + ++DKA F +AL L+ LN G DK +
Sbjct: 435 -QRGIAYERLKQWDKAEPNFKRALELNPEQPQVLNYLG------------YSWVDKGINL 481
Query: 224 DECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVL 283
DE + +A++L ++ Y + RLG+++++V
Sbjct: 482 DE---------------------GMKMISRAVELRPNDGYIVDSLGWAHYRLGDFDQSVT 520
Query: 284 NYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDI 331
++AIEL + +P LG +Y + ++ + +A+ + DD+
Sbjct: 521 ELERAIELKAGDPTINDHLGDAYWRVGRKIEAVYQWNRAL-IGDNDDV 567
Score = 35.4 bits (80), Expect = 5e-06
Identities = 32/128 (25%), Positives = 54/128 (42%)
Query: 266 FYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVEL 325
F A +LNR G E L + + LD K+P LG + + +I Y + +
Sbjct: 293 FSIAGALNREGAEEIVTLYLQTSRALDPKSPDTLILLGGLAEAMKQPERAITFYREVPKD 352
Query: 326 NPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALM 385
+P IS LG + ES + L+ + + ++ G+ K+Y+
Sbjct: 353 SPMHRISELQLGLTLAQTGKVEESRKHLLSLLESDPKDIRSYLAYGSVLSDAKDYKAMAE 412
Query: 386 CYDKAIEI 393
YDKA+E+
Sbjct: 413 NYDKAVEV 420
Score = 34.7 bits (78), Expect = 8e-06
Identities = 37/206 (17%), Positives = 85/206 (41%), Gaps = 6/206 (2%)
Query: 22 ESSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYF 81
+S T +G K E ++ + + + P + S LG + ++ + +
Sbjct: 321 KSPDTLILLGGLAEAMKQPERAITFYREVPKDSPMHRISELQLGLTLAQTGKVEESRKHL 380
Query: 82 GRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGK-----TWFYKGICL 136
L+E +P++ + + G + ++Y Y+K +E+ +V + +F +GI
Sbjct: 381 LSLLESDPKDIRSYLAYGSVLSDAKDYKAMAENYDKAVEVIGAVPQKSDWSVFFQRGIAY 440
Query: 137 KMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNG-EYDKAIGCFDKALTLDGNLKY 195
+ L +D++ F ++ N LGY + G D+ + +A+ L N Y
Sbjct: 441 ERLKQWDKAEPNFKRALELNPEQPQVLNYLGYSWVDKGINLDEGMKMISRAVELRPNDGY 500
Query: 196 SLNGKGLCCEKKEQYTMAVECFDKAV 221
++ G + + +V ++A+
Sbjct: 501 IVDSLGWAHYRLGDFDQSVTELERAI 526
Score = 31.6 bits (70), Expect = 7e-05
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 279 EKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGY 338
E+A+ Y++ + + I LGL+ + S + +E +P+D S+ G
Sbjct: 340 ERAITFYREVPKDSPMHRISELQLGLTLAQTGKVEESRKHLLSLLESDPKDIRSYLAYGS 399
Query: 339 LQYKNKNYNESISYFEKSLDLNSN--NKYAWNGL---GNSYLLLKNYEKALMCYDKAIEI 393
+ K+Y ++K++++ K W+ G +Y LK ++KA + +A+E+
Sbjct: 400 VLSDAKDYKAMAENYDKAVEVIGAVPQKSDWSVFFQRGIAYERLKQWDKAEPNFKRALEL 459
Query: 394 DP 395
+P
Sbjct: 460 NP 461
Score = 29.3 bits (64), Expect = 3e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 31 GEQCYLEKDYETSVKCFDKALELDPDNT 58
G +++DY T++ + KALE DP N+
Sbjct: 58 GRNADVDQDYPTAISLYKKALEYDPANS 85
Score = 28.5 bits (62), Expect = 6e-04
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 41 ETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGE 100
+ +K +A+EL P++ ++ LG + D + R IEL+ + LG+
Sbjct: 482 DEGMKMISRAVELRPNDGYIVDSLGWAHYRLGDFDQSVTELERAIELKAGDPTINDHLGD 541
Query: 101 IHLSQEEYDKALYYYNKLLEIDN 123
+ +A+Y +N+ L DN
Sbjct: 542 AYWRVGRKIEAVYQWNRALIGDN 564