Pairwise Alignments

Query, 410 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 523 a.a., COG1361 S-layer family protein from Methanococcus maripaludis S2

 Score =  236 bits (602), Expect = 1e-66
 Identities = 136/378 (35%), Positives = 218/378 (57%), Gaps = 27/378 (7%)

Query: 2   RLLAKSGLLLLVFALISSSYALSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDN 61
           +++   GLL ++   +S   AL +D+PQY          NPNVIHPGDDV++WI V ND 
Sbjct: 6   KIILAIGLLSILATAVS---ALEIDEPQY----------NPNVIHPGDDVDVWIDVANDE 52

Query: 62  -YDKQLKDVKVEISPHYPFEIKQVNPETGVAEISHLNEGESDTAYFKIHVSENAPSDEYR 120
             D+ ++D+++ +  +YPFE+KQVNP  GV EIS LNEGESDTAYFK+ ++++A S +YR
Sbjct: 53  GSDEIIEDLRISVESNYPFEVKQVNPTKGVYEISQLNEGESDTAYFKLRINDDASSRDYR 112

Query: 121 IDVTVT--ATEYESGDEPNEREKTLTKIYYVPIYGIAKFEINLDDNNPINPSESEELEVY 178
           +DVTV+    EY+ GD+     K+ TKIYY+P+YG+A FEIN  D   + P+++E +++ 
Sbjct: 113 LDVTVSYDIVEYD-GDDRQVISKSYTKIYYIPVYGLANFEIN-SDGVTLTPAKTENVQIK 170

Query: 179 IKNQGTGTAKYLTLNLAGTSDLNIVGPTTFYLESLSPQTQKLIKVDAYAIPTTEDGIYSI 238
           + N+GTGTAK  TL +   + +N +  T FYL SLSP   KL+ ++ +A     +G Y I
Sbjct: 171 VTNKGTGTAKEATLTIGSNNLINPIDTTKFYLGSLSPDITKLLSLNLHASGDATEGSYLI 230

Query: 239 NANIEWIGEDGAEYTSSIPINLKVKSTIFDNQPFLYLD--GVKAISGGQEVTIALANRGT 296
            A + WI  DG E +  I I   V+  I      +  D   +KA     ++ + L N G 
Sbjct: 231 PATLSWIDSDGTENSEVINIGFIVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGH 290

Query: 297 SKLKHCVLEIDGAVELNDNY----IRYIGDLEEDDSDSGIYELEVFGDSKTN---ITATL 349
            + K+  +++       D++     + IG L   D+ +  + ++V  D++     +   +
Sbjct: 291 GEAKNIEIDLLSEYPFKDSWSNSNFKNIGTLTSGDTKTATFYIDVDKDAEAKHYAVPLNI 350

Query: 350 TYFNEYHEEFTLVQEFEL 367
           TY + + EE + ++  +L
Sbjct: 351 TYMDIFDEEHSEMEYIDL 368



 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 96/422 (22%), Positives = 169/422 (40%), Gaps = 59/422 (13%)

Query: 16  LISSSYALSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDNYDKQLKDVKVEISP 75
           +IS SY      P Y + N E       +  P    N+ IKV N       K+  + I  
Sbjct: 131 VISKSYTKIYYIPVYGLANFEINSDGVTLT-PAKTENVQIKVTNKGTGTA-KEATLTIGS 188

Query: 76  HYPFEIKQVNP-ETGVAEISHLNEGESDTAYFKIHVSENAPSDEYRIDVTVTATEYESGD 134
           +       +NP +T    +  L+   +      +H S +A    Y I  T++  + + G 
Sbjct: 189 N-----NLINPIDTTKFYLGSLSPDITKLLSLNLHASGDATEGSYLIPATLSWIDSD-GT 242

Query: 135 EPNEREKTLTKIYYVPIYGIAKFEINLDDNNPI-NPSESEELEVYIK------NQGTGTA 187
           E +E          + I  I + +INL  +N I +P+E +  E Y+K      N G G A
Sbjct: 243 ENSE---------VINIGFIVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGHGEA 293

Query: 188 KYLTLNLAGTSDLNIVGPTTFYLESLSPQTQKLIKVDAYAIPTTEDGI---YSINANIEW 244
           K + ++L            + + +++   T    K   + I   +D     Y++  NI +
Sbjct: 294 KNIEIDLLSEYPFKDSWSNSNF-KNIGTLTSGDTKTATFYIDVDKDAEAKHYAVPLNITY 352

Query: 245 IGEDGAEYTSSIPINLKVK-STIFDNQPFLYLDGVKAISGGQEVTIALANRGTSKLKHCV 303
           +     E++    I+L +K   + +  P  Y      +  G E TI L  + T   K   
Sbjct: 353 MDIFDEEHSEMEYIDLYIKPKPVLEILPETY-----TLKAGDENTITLTLQNTGSEKAQS 407

Query: 304 LEIDGAVELNDNYIRY------IGDLEEDDSDSGIYELEVFGDSKTNITATLTYFNEYHE 357
           ++I  A++       Y      IG L+ +++  G   ++V  D+  N    +T       
Sbjct: 408 VKIT-AIKNTAQPFEYTQKTDSIGTLDTNETGEGQLIIDVDSDA-ANKEYLITV------ 459

Query: 358 EFTLVQEFELDPANSQVKQE--------GTNYTFIGLIVVLAV--VAYILYRRWKKRKDS 407
           E   V + E    N  + Q+        G+N T + L+V+L V  + Y +Y + KK K +
Sbjct: 460 EVRSVGDSEEGDDNVYISQKTIRVNVEGGSNSTLVYLVVLLLVGGLGYYMYLKRKKDKVT 519

Query: 408 EE 409
           E+
Sbjct: 520 EK 521