Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 414 a.a., multidrug ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 90/430 (20%), Positives = 187/430 (43%), Gaps = 68/430 (15%)

Query: 9   FAGRNITQKKTQ-------SLLTIIGIVIGILAIVSLISLGYGVQNYITEEI--SKAGAS 59
           F G   T+ K +       S+ ++IG+ +G+LA++ ++S+  G Q  ++  I      A+
Sbjct: 8   FIGTRYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRILGMVPHAT 67

Query: 60  VITVYPSQQITSIAMSKNFNDRDLKAVEDVRGVDVVLY-GWFGGTQVTYHD--QEYYSSV 116
           ++ V P      +A +   N +   AV   +   +  Y G     +++  D  QE   S+
Sbjct: 68  IVGVNPIDDWQPVAAAAMKNPQVTAAVPFTQMDGMFSYKGAMQPIEISGIDPAQEGKVSI 127

Query: 117 FATKSSTYQIFFTEAYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDREIDIGDKIEI--- 173
            A      ++        +L+ G       ++  V+G   A       +++GDK+ +   
Sbjct: 128 VAQHIVRGKLD-------DLKPG-------EFGVVVGEITARRF---RLNVGDKLTLIVP 170

Query: 174 -----------NDKKYKVVGILEQIGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKD 222
                        ++  VVGI +     D   +++   +AA       ++     + +KD
Sbjct: 171 EISTAPGGITPRMQRLNVVGIFKVGAELDGSMAMIHMADAAEIQHWQPNQVQSVRLAVKD 230

Query: 223 GEDVTKVSEDIEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAV 282
                KVS DI   L  +   ++++         +  S+FS + +    +  + L++ AV
Sbjct: 231 LYAAPKVSSDIAASLGAAYKPDDWT--------HTQGSLFSAMKMEKTMIGLLLLMIVAV 282

Query: 283 GISN---TMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGIL-- 337
              N   T+ M + ++  DI IL+ +GA    I++IF+V+   +G+ G ++G +LG++  
Sbjct: 283 AAFNIIATLIMVVNDKGADIAILRTIGATPRQIMAIFMVQGTVIGIVGTLIGGVLGVIAA 342

Query: 338 --IAKAIEYVAAISGYGLIRAWISW------EL----IVGVLVFSFVVGILSGYFPARSG 385
             +++ + +V  ++G  +  + + +      EL    +V +    FV+  L+  +PA   
Sbjct: 343 LNVSELVGWVERVTGQHIFSSDVYFVSNLPSELQGGDVVLICTAGFVLSFLATLYPAYRA 402

Query: 386 AKLNPVDTLR 395
           AK+ P   LR
Sbjct: 403 AKIEPAHALR 412