Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 693 a.a., MacB family efflux pump subunit from Paraburkholderia sabiae LMG 24235

 Score =  125 bits (315), Expect = 3e-33
 Identities = 95/400 (23%), Positives = 191/400 (47%), Gaps = 20/400 (5%)

Query: 5   DVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVY 64
           +    A R +   + +++LT++GI+IGI ++VS++++G G + Y+ +EI   G + I++Y
Sbjct: 301 EAAGMAWRALVSHRLRTVLTMLGIIIGITSVVSIVAIGEGAKRYMLDEIGSIGTNTISIY 360

Query: 65  PS--QQITSIAMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSS 122
           P   Q  +     +     D+ A+ +   +D           + Y +    + V      
Sbjct: 361 PGADQGDSQADRIQTLVPADVSALAEQPYIDSTTPETSRNLVLRYRNVNVNALVSGVGEF 420

Query: 123 TYQIFFT---EAYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDREID-IGDKIEINDKKY 178
            +Q+  T   +  G+  ++ R          VI  +     F   ++ +G  + + D   
Sbjct: 421 WFQVRGTRVAQGIGFGPDEVR----RQAQVVVIDPNTRQRLFGANVNPLGQVMLVGDLPC 476

Query: 179 KVVGILEQIGNPDDDN---SIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSED-IE 234
            V+G+  +  +   D    ++ +PY  AS         +   V+++ G+  +KV+ED + 
Sbjct: 477 IVIGVTAERKSTFGDAKSLNVWLPYTTASGRLFGQQYLDSITVRVRAGQP-SKVAEDGLV 535

Query: 235 DELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILE 294
             +    G ++F     + + +++      LT+ L  +A ISL+VG +G+ N M +S+ E
Sbjct: 536 KIMTQRHGRKDFFTYNMDTVVKTVEKTGRSLTLLLTLIAVISLVVGGIGVMNIMLVSVTE 595

Query: 295 RRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYGLI 354
           R ++IGI  A+GA    I+  F+VEA  + L GG +G  L    A  + +   I  + ++
Sbjct: 596 RTREIGIRMAVGARQGDIMQQFLVEAVMVCLMGGAIGVALA--FASGVAFSLFIVQWKMV 653

Query: 355 RAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTL 394
               S   ++   + S ++G++ G+ PAR+ A+L+P+D L
Sbjct: 654 ---FSMTSVLAAFLCSTLIGVVFGFMPARNAARLDPIDAL 690