Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 646 a.a., MacB family efflux pump subunit from Serratia liquefaciens MT49

 Score =  126 bits (316), Expect = 2e-33
 Identities = 98/405 (24%), Positives = 195/405 (48%), Gaps = 20/405 (4%)

Query: 2   KPKDVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVI 61
           + ++ +  A + +   + ++ LT+ GI+ GI A+V++++LG G +    E I   G +V+
Sbjct: 253 RTRESLQMALKAMNAHRLRTALTMTGIIFGIAAVVTVVALGEGAKQRTLESIKDLGTNVV 312

Query: 62  TVYPSQQI--TSIAMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFAT 119
           ++YP +     SI   +     D  A+     VD V         + +  +   +S+   
Sbjct: 313 SIYPGRDFFDDSIDSIRTLVPADADALASQSFVDSVSPEVSASENIRFRSKSANASISGV 372

Query: 120 KSSTYQIFFTEAYGYELEKGR-WMKDSDKYTCVIGYSLAHDTFDREIDI---GDKIEIND 175
                ++      G +L +GR ++ D +    VI    A      +  +   G  + +  
Sbjct: 373 GRDNLRVS-----GLKLIQGRNFLDDRNALQEVIIDENARQALFGDFGVEPLGQIVFLGA 427

Query: 176 KKYKVVGILEQIGNPDD-DNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSE--D 232
              +VVG+++   N D   N I +    ++ ++ +  +  +  + ++  EDV+  +    
Sbjct: 428 VPARVVGVVQS--NQDSAPNRIRVWMPYSTVMYRMVGKSTLSSINVRLKEDVSNEAAVAA 485

Query: 233 IEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSI 292
           I+  L    G ++F +   ++  +SI      LT+ ++ VA ISL++G++G+ N M +S+
Sbjct: 486 IKQLLTQRHGVKDFMLFNLDKYRKSIEHTSMTLTLLILMVASISLIIGSLGVMNIMLVSV 545

Query: 293 LERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYG 352
            ER  +IG+  A+GA  + I+  F++EA  + L GG     LGIL++ A   +  +   G
Sbjct: 546 TERTHEIGVRMAVGARRSDIMQQFMIEAVLVCLIGG----ALGILLSFAAGSLFTLLAGG 601

Query: 353 LIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           ++ A  SW+        S ++G++ GY PAR  A+++PV +L  E
Sbjct: 602 MLTAIYSWQAAAVAFCCSTLIGMIFGYLPARKAARMDPVISLASE 646