Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 648 a.a., MacB family efflux pump subunit from Dickeya dianthicola ME23

 Score =  140 bits (354), Expect = 8e-38
 Identities = 107/396 (27%), Positives = 196/396 (49%), Gaps = 21/396 (5%)

Query: 12  RNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQITS 71
           R ++ ++ ++ LT++GI+IGI ++VS+++LG G Q  + E I+  G S + ++  +    
Sbjct: 264 RAMSAQRIRTFLTMLGIIIGIASVVSVVALGKGSQQQMLEHINAMGTSTLEIFSGKDFGD 323

Query: 72  I--AMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSSTYQIFFT 129
           +  A  +     DL+ +E    +  V         + Y ++    SV    S   + FFT
Sbjct: 324 MHSAAIQTLRVNDLRPLEQQPYIHSVTPTVSTSATLRYANKAVSVSV----SGVGEQFFT 379

Query: 130 EAYGYELEKGRWMK--DSDKYT--CVIGYSLAHDTFDR-EIDIGDKIEINDKKYKVVGIL 184
              GY L +G        ++ T   VI  +  +  F   E  +G  I +     +++G+ 
Sbjct: 380 -VRGYVLSEGNGFSPLSVERLTQEAVIDQNTRNKLFPNGENPLGQVIFLGQLPCRIIGVA 438

Query: 185 --EQIGNPDDDN-SIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDIEDELEDSR 241
             +Q G   D+N ++ +PY                 V++KD  D++   + I   L    
Sbjct: 439 TRKQSGFGSDENLNVWVPYTTVMRRMVGQSYLRSITVRVKDNIDLSVAQQGITQILTRQH 498

Query: 242 GDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGI 301
           G+++F V+  + + ++I    + +T+ +  +A ISL+VG +G+ N M +S+ ER ++IG+
Sbjct: 499 GNKDFFVMNTDSIRQTIRQTTATMTLLVSAIALISLIVGGIGVMNIMLVSVTERTREIGV 558

Query: 302 LKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYGLIRAWISWE 361
             A+GA    I+  F++EA  + L GGI+G IL  L+A AI   + ISG   +    S  
Sbjct: 559 RMAVGARTGDIMQQFLIEAVLVCLCGGILGVILS-LLAGAI--ASRISGVTFV---YSAP 612

Query: 362 LIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           ++      S ++G++ G+FPAR  A+L P+  L  E
Sbjct: 613 VMALAFFCSSLIGVIFGFFPARRAARLQPIHALERE 648